Hb_000701_100

Information

Type -
Description -
Location Contig701: 199339-211513
Sequence    

Annotation

kegg
ID tcc:TCM_015773
description Phosphoribosyltransferase family protein
nr
ID XP_012080853.1
description PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
swissprot
ID Q42581
description Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2
trembl
ID A0A067K353
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16216 PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribose-phosphate pyrophosphokinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54860: 199859-210472 , PASA_asmbl_54861: 204954-205259 , PASA_asmbl_54862: 211080-211530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000701_100 0.0 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
2 Hb_001057_040 0.0719820921 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
3 Hb_004899_370 0.0732222427 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
4 Hb_000805_240 0.0747211115 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
5 Hb_005269_080 0.0759432796 - - protein with unknown function [Ricinus communis]
6 Hb_000005_090 0.0780265809 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
7 Hb_003414_050 0.0783190675 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
8 Hb_000922_040 0.0796194284 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
9 Hb_018124_010 0.0807616514 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
10 Hb_009615_070 0.0836149171 - - type X protein phosphatase-II [Populus trichocarpa]
11 Hb_002303_060 0.0839151138 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001222_080 0.084480455 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_004127_020 0.0863353262 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
14 Hb_002000_140 0.0866501472 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
15 Hb_000808_190 0.0871611237 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
16 Hb_002007_210 0.0871771048 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
17 Hb_002676_090 0.0884241815 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
18 Hb_002110_200 0.0884481353 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_004143_150 0.0885463029 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
20 Hb_000261_140 0.0891629055 - - -

Gene co-expression network

sample Hb_000701_100 Hb_000701_100 Hb_001057_040 Hb_001057_040 Hb_000701_100--Hb_001057_040 Hb_004899_370 Hb_004899_370 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_005269_080 Hb_005269_080 Hb_000701_100--Hb_005269_080 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_003414_050 Hb_003414_050 Hb_000701_100--Hb_003414_050 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050 Hb_000406_080 Hb_000406_080 Hb_001057_040--Hb_000406_080 Hb_004143_150 Hb_004143_150 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_000001_060 Hb_000001_060 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004127_020 Hb_004127_020 Hb_004899_370--Hb_004127_020 Hb_004899_370--Hb_009615_070 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_000005_090--Hb_004127_020 Hb_000005_090--Hb_004899_370 Hb_003671_020 Hb_003671_020 Hb_003414_050--Hb_003671_020 Hb_003414_050--Hb_009615_070 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79502 3.59517 3.48667 8.49181 2.89069 5.10033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8271 15.0925 7.88699 4.44127 4.1735

CAGE analysis