Hb_000703_040

Information

Type -
Description -
Location Contig703: 73264-74287
Sequence    

Annotation

kegg
ID rcu:RCOM_1177160
description hypothetical protein
nr
ID XP_002518036.1
description hypothetical protein RCOM_1177160 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1177160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_040 0.0 - - hypothetical protein RCOM_1177160 [Ricinus communis]
2 Hb_002259_190 0.1914154075 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
3 Hb_004324_160 0.222418157 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_000321_130 0.2292004909 - - Alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_000917_170 0.2563768344 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
6 Hb_054865_070 0.2658960031 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
7 Hb_014720_010 0.2993438845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000599_320 0.3116584501 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
9 Hb_000008_380 0.3211972178 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_007547_020 0.3285433775 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
11 Hb_012753_220 0.3371371067 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
12 Hb_000130_450 0.3426982613 - - conserved hypothetical protein [Ricinus communis]
13 Hb_107429_010 0.3428633441 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
14 Hb_000388_030 0.3545238919 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
15 Hb_000155_090 0.3633433486 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
16 Hb_010519_030 0.3672536162 - - -
17 Hb_001410_050 0.369634796 - - putative polyprotein [Oryza sativa Japonica Group]
18 Hb_006355_120 0.3700469086 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002259_180 0.3720254594 - - -
20 Hb_012338_020 0.3722695669 - - -

Gene co-expression network

sample Hb_000703_040 Hb_000703_040 Hb_002259_190 Hb_002259_190 Hb_000703_040--Hb_002259_190 Hb_004324_160 Hb_004324_160 Hb_000703_040--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_000703_040--Hb_000321_130 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_054865_070 Hb_054865_070 Hb_000703_040--Hb_054865_070 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_002259_190--Hb_054865_070 Hb_002259_190--Hb_004324_160 Hb_002259_190--Hb_000321_130 Hb_010519_030 Hb_010519_030 Hb_002259_190--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_002259_190--Hb_001214_080 Hb_004324_160--Hb_000321_130 Hb_007547_020 Hb_007547_020 Hb_004324_160--Hb_007547_020 Hb_012338_020 Hb_012338_020 Hb_004324_160--Hb_012338_020 Hb_004324_160--Hb_054865_070 Hb_000321_130--Hb_007547_020 Hb_000321_130--Hb_012338_020 Hb_000321_130--Hb_054865_070 Hb_107429_010 Hb_107429_010 Hb_000917_170--Hb_107429_010 Hb_000740_020 Hb_000740_020 Hb_000917_170--Hb_000740_020 Hb_004163_020 Hb_004163_020 Hb_000917_170--Hb_004163_020 Hb_000175_150 Hb_000175_150 Hb_000917_170--Hb_000175_150 Hb_011457_030 Hb_011457_030 Hb_000917_170--Hb_011457_030 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_054865_070--Hb_010519_030 Hb_054865_070--Hb_001214_080 Hb_000130_450 Hb_000130_450 Hb_014720_010--Hb_000130_450 Hb_005375_050 Hb_005375_050 Hb_014720_010--Hb_005375_050 Hb_000008_380 Hb_000008_380 Hb_014720_010--Hb_000008_380 Hb_011512_160 Hb_011512_160 Hb_014720_010--Hb_011512_160 Hb_000878_140 Hb_000878_140 Hb_014720_010--Hb_000878_140 Hb_014720_010--Hb_004129_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.266129 0.0496823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.354265 0.153137 0 0

CAGE analysis