Hb_000703_070

Information

Type -
Description -
Location Contig703: 90650-97493
Sequence    

Annotation

kegg
ID rcu:RCOM_0613770
description hypothetical protein
nr
ID XP_012074174.1
description PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
swissprot
ID P08443
description ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1
trembl
ID A0A067KJA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09798 PE=4 SV=1
Gene Ontology
ID GO:0000023
description atp synthase protein i-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54919: 90713-97420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_070 0.0 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
2 Hb_027298_020 0.0523352497 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
3 Hb_010557_010 0.076656051 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
4 Hb_002411_100 0.083249723 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_004117_150 0.0977726593 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
6 Hb_002811_250 0.0981705583 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
7 Hb_002232_380 0.0985388393 - - malate dehydrogenase, putative [Ricinus communis]
8 Hb_005488_190 0.1009166505 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_000803_170 0.1019497144 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
10 Hb_001300_130 0.1031345618 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
11 Hb_001047_180 0.1042404991 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002811_310 0.1059940952 - - hypothetical protein VITISV_025505 [Vitis vinifera]
13 Hb_006681_020 0.1066566593 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
14 Hb_000045_050 0.1078673203 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
15 Hb_000802_050 0.1104406438 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
16 Hb_000193_220 0.1117582406 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
17 Hb_005563_040 0.1118164896 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
18 Hb_000146_030 0.111855761 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
19 Hb_005488_160 0.112466896 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_000544_080 0.1141945423 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_070 Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_010557_010 Hb_010557_010 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380 Hb_001300_130 Hb_001300_130 Hb_027298_020--Hb_001300_130 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_027298_020--Hb_010557_010 Hb_027298_020--Hb_002232_380 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_010557_010--Hb_002411_100 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_004208_090 Hb_004208_090 Hb_004117_150--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_004117_150--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_004117_150--Hb_001999_260 Hb_004007_170 Hb_004007_170 Hb_004117_150--Hb_004007_170 Hb_000768_120 Hb_000768_120 Hb_004117_150--Hb_000768_120 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_006829_080 Hb_006829_080 Hb_002232_380--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12873 4.25897 43.8011 10.7246 2.72255 3.0929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61959 3.76634 1.59994 4.19518 50.8563

CAGE analysis