Hb_000703_080

Information

Type -
Description -
Location Contig703: 100561-106598
Sequence    

Annotation

kegg
ID rcu:RCOM_1600140
description guanine nucleotide exchange factor P532, putative
nr
ID XP_002510629.1
description guanine nucleotide exchange factor P532, putative [Ricinus communis]
swissprot
ID Q4U2R1
description E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
trembl
ID B9R8I6
description Guanine nucleotide exchange factor P532, putative OS=Ricinus communis GN=RCOM_1600140 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54921: 100725-103485 , PASA_asmbl_54922: 104295-106056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_080 0.0 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
2 Hb_000284_210 0.0612558282 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002097_090 0.0670525811 - - Splicing factor 3A subunit, putative [Ricinus communis]
4 Hb_004934_090 0.0777188008 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
5 Hb_003728_030 0.0783225191 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
6 Hb_001454_060 0.0786368107 - - uncharacterized protein LOC100527252 [Glycine max]
7 Hb_000390_060 0.080163833 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
8 Hb_000608_120 0.0803679484 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
9 Hb_000236_370 0.082364183 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
10 Hb_030312_040 0.0824047961 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
11 Hb_000017_340 0.082868507 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
12 Hb_015941_030 0.0832625372 - - unknown [Populus trichocarpa]
13 Hb_000522_090 0.0836999329 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
14 Hb_001829_010 0.0847563478 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_007364_010 0.0850643934 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
16 Hb_000316_030 0.0850689137 - - zinc finger protein, putative [Ricinus communis]
17 Hb_028639_060 0.0853849119 - - transporter, putative [Ricinus communis]
18 Hb_000184_130 0.0854653286 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
19 Hb_001019_170 0.0862130592 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
20 Hb_000300_280 0.0873087883 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_080 Hb_000703_080 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_001454_060 Hb_001454_060 Hb_000703_080--Hb_001454_060 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_000284_210--Hb_004934_090 Hb_000284_210--Hb_002097_090 Hb_003994_240 Hb_003994_240 Hb_000284_210--Hb_003994_240 Hb_009620_040 Hb_009620_040 Hb_000284_210--Hb_009620_040 Hb_002046_040 Hb_002046_040 Hb_000284_210--Hb_002046_040 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_004934_090--Hb_003994_240 Hb_003728_030--Hb_002030_030 Hb_000483_360 Hb_000483_360 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_003728_030--Hb_003994_240 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_003434_060 Hb_003434_060 Hb_000390_060--Hb_003434_060 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000316_030 Hb_000316_030 Hb_000390_060--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6495 14.3078 3.28186 5.09346 26.6142 37.9124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7877 13.5513 15.4876 9.67622 5.9541

CAGE analysis