Hb_000703_090

Information

Type -
Description -
Location Contig703: 106716-112168
Sequence    

Annotation

kegg
ID csv:101230632
description 14-3-3-like protein D-like
nr
ID XP_004136830.1
description PREDICTED: 14-3-3-like protein D [Cucumis sativus]
swissprot
ID Q96453
description 14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1
trembl
ID A0A0A0K1U0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G048090 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 14-3-3-like protein d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54923: 106762-111693
cDNA
(Sanger)
(ID:Location)		 030_M15.ab1: 106768-110268

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_090 0.0 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
2 Hb_003494_240 0.0747263788 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
3 Hb_002215_050 0.0878259129 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_015941_030 0.0932695525 - - unknown [Populus trichocarpa]
5 Hb_001124_210 0.0956114141 - - conserved hypothetical protein [Ricinus communis]
6 Hb_024714_030 0.0969971485 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
7 Hb_000386_040 0.0974060871 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_001369_060 0.0975543041 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
9 Hb_001454_060 0.09803408 - - uncharacterized protein LOC100527252 [Glycine max]
10 Hb_002400_070 0.0990284115 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
11 Hb_000261_040 0.1018613786 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_030312_040 0.1019851751 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
13 Hb_002686_270 0.1020460762 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001454_140 0.1021211287 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_033491_010 0.1024393993 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
16 Hb_001246_100 0.1031274034 - - Ras-related small GTP-binding family protein [Theobroma cacao]
17 Hb_002014_080 0.1041028954 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
18 Hb_000188_100 0.1047381572 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
19 Hb_000172_400 0.1082044181 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_001655_070 0.1087782762 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_090 Hb_000703_090 Hb_003494_240 Hb_003494_240 Hb_000703_090--Hb_003494_240 Hb_002215_050 Hb_002215_050 Hb_000703_090--Hb_002215_050 Hb_015941_030 Hb_015941_030 Hb_000703_090--Hb_015941_030 Hb_001124_210 Hb_001124_210 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_001454_060 Hb_001454_060 Hb_003494_240--Hb_001454_060 Hb_000608_120 Hb_000608_120 Hb_003494_240--Hb_000608_120 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_002215_050--Hb_024714_030 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_003847_080 Hb_003847_080 Hb_001124_210--Hb_003847_080 Hb_141131_010 Hb_141131_010 Hb_001124_210--Hb_141131_010 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_024714_030--Hb_003638_140 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_000049_040 Hb_000049_040 Hb_000386_040--Hb_000049_040 Hb_003038_030 Hb_003038_030 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_001246_100 Hb_001246_100 Hb_000386_040--Hb_001246_100 Hb_000188_100 Hb_000188_100 Hb_000386_040--Hb_000188_100 Hb_000172_370 Hb_000172_370 Hb_000386_040--Hb_000172_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
194.661 104.265 14.6134 86.242 221.919 334.516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
230.549 165.146 156.744 50.4335 18.9097

CAGE analysis