Hb_000703_140

Information

Type -
Description -
Location Contig703: 163187-165575
Sequence    

Annotation

kegg
ID rcu:RCOM_1347480
description Transcription initiation factor TFIID subunit, putative
nr
ID NP_001295670.1
description transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
swissprot
ID Q6NQH4
description Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1
trembl
ID E9JFW0
description Transcription initiation factor TFIID subunit OS=Jatropha curcas GN=JCGZ_14008 PE=2 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54937: 152540-165629 , PASA_asmbl_54939: 164178-164388 , PASA_asmbl_54940: 164812-165163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_140 0.0 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
2 Hb_000260_080 0.0457193508 - - thioredoxin H-type 1 [Hevea brasiliensis]
3 Hb_011794_070 0.0614623572 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
4 Hb_027472_180 0.0645146046 - - hypothetical protein L484_016229 [Morus notabilis]
5 Hb_009711_030 0.0656142895 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
6 Hb_000376_050 0.0661652 - - polyadenylate-binding protein, putative [Ricinus communis]
7 Hb_000883_050 0.0685833368 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
8 Hb_000928_240 0.0701016088 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
9 Hb_125000_010 0.0706193886 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
10 Hb_000329_040 0.0718079746 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
11 Hb_000956_010 0.0718529435 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
12 Hb_000025_530 0.072873414 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
13 Hb_022250_040 0.0739475008 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
14 Hb_000531_020 0.0741088037 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
15 Hb_001008_060 0.0753630204 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
16 Hb_002097_110 0.0757845576 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_002477_240 0.0759569336 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_002603_100 0.0768530047 - - ATATH9, putative [Ricinus communis]
19 Hb_011465_040 0.0773019934 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
20 Hb_010436_070 0.0777968484 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000703_140 Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_000260_080--Hb_011794_070 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_011794_070--Hb_000329_040 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_011794_070--Hb_004108_230 Hb_002097_110 Hb_002097_110 Hb_027472_180--Hb_002097_110 Hb_027472_180--Hb_000376_050 Hb_004662_030 Hb_004662_030 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_007426_230 Hb_007426_230 Hb_027472_180--Hb_007426_230 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_009711_030--Hb_002097_110 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_000883_050--Hb_001427_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6414 10.1789 15.058 17.4818 55.3653 53.9791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0243 95.6943 57.7932 18.3419 12.0282

CAGE analysis