Hb_000703_150

Information

Type -
Description -
Location Contig703: 166447-168552
Sequence    

Annotation

kegg
ID rcu:RCOM_0614170
description F-box/leucine rich repeat protein, putative
nr
ID XP_012072716.1
description PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
swissprot
ID I1SSI5
description F-box/LRR-repeat MAX2 homolog A OS=Petunia hybrida GN=MAX2A PE=1 SV=1
trembl
ID A0A067L102
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05239 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box lrr-repeat max2 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54937: 152540-165629
cDNA
(Sanger)
(ID:Location)		 018_G01.ab1: 167638-168406 , 047_B12.ab1: 167638-168419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_150 0.0 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
2 Hb_002111_070 0.0611946592 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
3 Hb_004676_010 0.0658129343 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
4 Hb_000739_100 0.0714565685 - - ku P80 DNA helicase, putative [Ricinus communis]
5 Hb_000390_320 0.0717612745 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
6 Hb_000083_120 0.0745646966 - - transcription factor, putative [Ricinus communis]
7 Hb_009615_170 0.0752028072 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000656_380 0.079463203 - - PREDICTED: exportin-T [Jatropha curcas]
9 Hb_001157_090 0.0795533983 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
10 Hb_000890_210 0.0803060391 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
11 Hb_000856_310 0.0806088067 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_143629_110 0.0809246086 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
13 Hb_000107_490 0.0843646734 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_001318_020 0.0853418199 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
15 Hb_000012_260 0.085455396 - - Far upstream element-binding 2 [Gossypium arboreum]
16 Hb_004117_310 0.0857297469 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
17 Hb_001761_130 0.0857919176 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
18 Hb_006355_090 0.087275062 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
19 Hb_001314_010 0.0879389061 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
20 Hb_000680_090 0.0884357273 - - Protein SEY1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000703_150 Hb_000703_150 Hb_002111_070 Hb_002111_070 Hb_000703_150--Hb_002111_070 Hb_004676_010 Hb_004676_010 Hb_000703_150--Hb_004676_010 Hb_000739_100 Hb_000739_100 Hb_000703_150--Hb_000739_100 Hb_000390_320 Hb_000390_320 Hb_000703_150--Hb_000390_320 Hb_000083_120 Hb_000083_120 Hb_000703_150--Hb_000083_120 Hb_009615_170 Hb_009615_170 Hb_000703_150--Hb_009615_170 Hb_000080_150 Hb_000080_150 Hb_002111_070--Hb_000080_150 Hb_002043_140 Hb_002043_140 Hb_002111_070--Hb_002043_140 Hb_002111_070--Hb_009615_170 Hb_000941_130 Hb_000941_130 Hb_002111_070--Hb_000941_130 Hb_000890_210 Hb_000890_210 Hb_002111_070--Hb_000890_210 Hb_000579_230 Hb_000579_230 Hb_004676_010--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_004676_010--Hb_012395_140 Hb_004676_010--Hb_009615_170 Hb_000395_070 Hb_000395_070 Hb_004676_010--Hb_000395_070 Hb_001754_040 Hb_001754_040 Hb_004676_010--Hb_001754_040 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_002375_010 Hb_002375_010 Hb_000390_320--Hb_002375_010 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_143629_110 Hb_143629_110 Hb_000390_320--Hb_143629_110 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_123903_010 Hb_123903_010 Hb_000390_320--Hb_123903_010 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_001500_140 Hb_001500_140 Hb_000083_120--Hb_001500_140 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.47834 6.19256 3.37137 4.54068 4.77308 6.55
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32516 2.70024 5.95547 7.06283 2.87526

CAGE analysis