Hb_000703_160

Information

Type -
Description -
Location Contig703: 168911-169708
Sequence    

Annotation

kegg
ID mdm:103444105
description serine/threonine-protein kinase CTR1-like
nr
ID XP_012072715.1
description PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067FIU2
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039192mg PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase edr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54942: 168755-194788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_160 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
2 Hb_003449_100 0.0519311196 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
3 Hb_074399_010 0.0674305697 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
4 Hb_007919_110 0.0831564562 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_005144_210 0.0869585578 - - conserved hypothetical protein [Ricinus communis]
6 Hb_161568_010 0.0873834551 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000958_080 0.087481541 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002615_070 0.0877590172 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
9 Hb_014231_020 0.0921324319 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_002249_020 0.0963193574 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
11 Hb_004712_190 0.0974499434 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
12 Hb_004096_160 0.0984018895 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
13 Hb_000753_160 0.0986180689 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_003506_030 0.0996198215 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_016448_010 0.1017263277 - - Protein MYG1, putative [Ricinus communis]
16 Hb_000497_190 0.1020939482 - - sterol isomerase, putative [Ricinus communis]
17 Hb_003540_050 0.1030590923 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
18 Hb_003687_080 0.1054867931 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_004013_030 0.1075931621 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
20 Hb_000805_210 0.1084019492 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000703_160 Hb_000703_160 Hb_003449_100 Hb_003449_100 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_007919_110 Hb_007919_110 Hb_000703_160--Hb_007919_110 Hb_005144_210 Hb_005144_210 Hb_000703_160--Hb_005144_210 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000958_080 Hb_000958_080 Hb_000703_160--Hb_000958_080 Hb_003449_100--Hb_007919_110 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_003449_100--Hb_000753_160 Hb_003449_100--Hb_000958_080 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_000258_220 Hb_000258_220 Hb_074399_010--Hb_000258_220 Hb_003687_080 Hb_003687_080 Hb_074399_010--Hb_003687_080 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_004096_160 Hb_004096_160 Hb_161568_010--Hb_004096_160 Hb_004228_120 Hb_004228_120 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_161568_010--Hb_000958_080 Hb_000497_190 Hb_000497_190 Hb_161568_010--Hb_000497_190 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9313 22.0821 55.4877 39.5532 16.549 11.8001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.97826 10.4547 9.50728 14.4199 15.6833

CAGE analysis