Hb_000703_190

Information

Type -
Description -
Location Contig703: 180568-194802
Sequence    

Annotation

kegg
ID rcu:RCOM_0614160
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012072714.1
description PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID B9SRD1
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0614160 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase edr1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54942: 168755-194788 , PASA_asmbl_54947: 181950-186488
cDNA
(Sanger)
(ID:Location)		 035_K04.ab1: 181950-186488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_190 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
2 Hb_000260_460 0.0614051854 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
3 Hb_000078_140 0.0635932387 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
4 Hb_001817_170 0.0648982786 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
5 Hb_000139_080 0.0668076646 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
6 Hb_000317_040 0.0673385176 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_159809_070 0.0704245692 - - phospholipase A-2-activating protein, putative [Ricinus communis]
8 Hb_089839_010 0.0710356219 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
9 Hb_000815_300 0.0710517308 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_000476_060 0.0711308881 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_003626_070 0.0717576715 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
12 Hb_002042_050 0.072097103 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
13 Hb_003098_070 0.0726843733 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
14 Hb_000046_500 0.0730508478 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
15 Hb_003498_100 0.0732736212 - - component of oligomeric golgi complex, putative [Ricinus communis]
16 Hb_019181_040 0.0735187722 - - component of oligomeric golgi complex, putative [Ricinus communis]
17 Hb_000567_230 0.0739319234 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
18 Hb_032202_220 0.0755770264 - - ring finger protein, putative [Ricinus communis]
19 Hb_000705_230 0.0765132824 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
20 Hb_074197_040 0.0769478318 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_000703_190 Hb_000703_190 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_000101_080 Hb_000101_080 Hb_000260_460--Hb_000101_080 Hb_000028_520 Hb_000028_520 Hb_000260_460--Hb_000028_520 Hb_000260_460--Hb_000078_140 Hb_000260_460--Hb_000317_040 Hb_001703_040 Hb_001703_040 Hb_000260_460--Hb_001703_040 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_006189_020 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_003777_200 Hb_003777_200 Hb_000317_040--Hb_003777_200 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000046_500 Hb_000046_500 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_159809_070--Hb_000078_140 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89331 11.6405 19.734 20.872 9.8718 7.36257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36252 9.10135 12.3758 12.4848 15.5233

CAGE analysis