Hb_000703_200

Information

Type -
Description -
Location Contig703: 199928-212709
Sequence    

Annotation

kegg
ID rcu:RCOM_1194900
description ATP-dependent RNA helicase, putative
nr
ID XP_012086291.1
description PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
swissprot
ID Q9H6S0
description Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2
trembl
ID A0A067JPZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22947 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54949: 199968-212745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_200 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
2 Hb_009302_030 0.0643202705 - - hypothetical protein RCOM_1176340 [Ricinus communis]
3 Hb_000024_040 0.0659126589 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
4 Hb_007426_060 0.0671656796 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
5 Hb_001545_150 0.0708480258 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
6 Hb_001723_010 0.0726387075 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
7 Hb_004517_020 0.073342524 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
8 Hb_000363_120 0.0741924943 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
9 Hb_004899_040 0.0756898572 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
10 Hb_001951_170 0.0758257783 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_000479_070 0.075885327 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_010417_070 0.0772915709 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
13 Hb_003047_020 0.0778072297 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_005568_040 0.0779524402 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
15 Hb_000373_100 0.0779705888 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_000720_150 0.0785428724 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
17 Hb_005389_160 0.0795032533 - - PREDICTED: casein kinase I [Jatropha curcas]
18 Hb_003216_090 0.0804444173 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
19 Hb_000099_040 0.0811057731 - - unnamed protein product [Coffea canephora]
20 Hb_004785_030 0.0813122819 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_200 Hb_000703_200 Hb_009302_030 Hb_009302_030 Hb_000703_200--Hb_009302_030 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_000347_390 Hb_000347_390 Hb_000024_040--Hb_000347_390 Hb_001628_070 Hb_001628_070 Hb_000024_040--Hb_001628_070 Hb_004586_290 Hb_004586_290 Hb_000024_040--Hb_004586_290 Hb_004705_020 Hb_004705_020 Hb_000024_040--Hb_004705_020 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_007426_060--Hb_001534_210 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_001723_010--Hb_004517_020 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9911 37.4155 17.3036 14.7516 14.14 13.9391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.79705 9.50053 13.5299 21.4448 16.7978

CAGE analysis