Hb_000703_220

Information

Type -
Description -
Location Contig703: 231270-237149
Sequence    

Annotation

kegg
ID rcu:RCOM_0436130
description 50S ribosomal protein L1p, putative
nr
ID XP_012077990.1
description PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
swissprot
ID B6JER6
description 50S ribosomal protein L1 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplA PE=3 SV=1
trembl
ID A0A067KD59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12994 PE=4 SV=1
Gene Ontology
ID GO:0009507
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54953: 231477-231669 , PASA_asmbl_54954: 231671-236139 , PASA_asmbl_54956: 236444-236623 , PASA_asmbl_54957: 236776-236965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_220 0.0 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
2 Hb_005839_060 0.0566394052 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
3 Hb_004204_020 0.058540353 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
4 Hb_009133_010 0.0894986298 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
5 Hb_011689_020 0.0905129288 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_000166_110 0.0915225915 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
7 Hb_004370_030 0.0928184704 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
8 Hb_039946_020 0.0979493544 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002805_070 0.0999441809 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
10 Hb_000321_070 0.1002884678 - - protein with unknown function [Ricinus communis]
11 Hb_000160_040 0.1005831067 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
12 Hb_001289_080 0.1006965153 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_090804_010 0.101298654 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_006157_020 0.1014763859 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
15 Hb_002039_010 0.1034747289 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_033834_060 0.1040485615 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
17 Hb_026099_010 0.1052984612 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
18 Hb_039837_010 0.1054133569 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
19 Hb_002030_030 0.1056509338 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
20 Hb_067345_010 0.1065003523 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]

Gene co-expression network

sample Hb_000703_220 Hb_000703_220 Hb_005839_060 Hb_005839_060 Hb_000703_220--Hb_005839_060 Hb_004204_020 Hb_004204_020 Hb_000703_220--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_000703_220--Hb_009133_010 Hb_011689_020 Hb_011689_020 Hb_000703_220--Hb_011689_020 Hb_000166_110 Hb_000166_110 Hb_000703_220--Hb_000166_110 Hb_004370_030 Hb_004370_030 Hb_000703_220--Hb_004370_030 Hb_005839_060--Hb_000166_110 Hb_005839_060--Hb_004204_020 Hb_005839_060--Hb_009133_010 Hb_005839_060--Hb_011689_020 Hb_003673_060 Hb_003673_060 Hb_005839_060--Hb_003673_060 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_000184_130 Hb_000184_130 Hb_004204_020--Hb_000184_130 Hb_003362_040 Hb_003362_040 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_006692_030 Hb_006692_030 Hb_009133_010--Hb_006692_030 Hb_001789_240 Hb_001789_240 Hb_009133_010--Hb_001789_240 Hb_004724_190 Hb_004724_190 Hb_009133_010--Hb_004724_190 Hb_063090_010 Hb_063090_010 Hb_009133_010--Hb_063090_010 Hb_000889_020 Hb_000889_020 Hb_009133_010--Hb_000889_020 Hb_002805_070 Hb_002805_070 Hb_011689_020--Hb_002805_070 Hb_000284_110 Hb_000284_110 Hb_011689_020--Hb_000284_110 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_002044_060 Hb_002044_060 Hb_004370_030--Hb_002044_060 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_026099_010 Hb_026099_010 Hb_004370_030--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3888 5.56113 3.90865 4.01574 10.5252 19.0538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8693 9.18508 9.52679 13.6969 5.07351

CAGE analysis