Hb_000703_240

Information

Type -
Description -
Location Contig703: 252589-253363
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54958: 252573-255280
cDNA
(Sanger)
(ID:Location)		 003_F17.ab1: 252765-255256 , 006_D12.ab1: 252582-252970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_240 0.0 - - -
2 Hb_000497_180 0.1498209987 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
3 Hb_026698_010 0.1746084753 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000050_090 0.1763869796 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
5 Hb_000640_300 0.1766398397 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
6 Hb_005702_030 0.1783529489 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
7 Hb_000589_400 0.178379561 - - ESC, putative [Ricinus communis]
8 Hb_004738_020 0.1815699002 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000457_170 0.1839419642 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
10 Hb_000116_230 0.1898743407 - - -
11 Hb_000599_140 0.190397932 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
12 Hb_000237_080 0.1911560809 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
13 Hb_017434_060 0.1932624572 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
14 Hb_009701_010 0.1965440621 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
15 Hb_005843_150 0.1980315045 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
16 Hb_011344_170 0.203228554 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
17 Hb_010407_070 0.2034362719 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
18 Hb_017987_070 0.2035742964 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
19 Hb_002813_050 0.204698886 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
20 Hb_000050_100 0.2060214713 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_240 Hb_000703_240 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_026698_010 Hb_026698_010 Hb_000703_240--Hb_026698_010 Hb_000050_090 Hb_000050_090 Hb_000703_240--Hb_000050_090 Hb_000640_300 Hb_000640_300 Hb_000703_240--Hb_000640_300 Hb_005702_030 Hb_005702_030 Hb_000703_240--Hb_005702_030 Hb_000589_400 Hb_000589_400 Hb_000703_240--Hb_000589_400 Hb_005843_150 Hb_005843_150 Hb_000497_180--Hb_005843_150 Hb_000237_080 Hb_000237_080 Hb_000497_180--Hb_000237_080 Hb_002813_050 Hb_002813_050 Hb_000497_180--Hb_002813_050 Hb_005843_100 Hb_005843_100 Hb_000497_180--Hb_005843_100 Hb_096224_040 Hb_096224_040 Hb_000497_180--Hb_096224_040 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_000050_090--Hb_005702_030 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_017434_060 Hb_017434_060 Hb_005702_030--Hb_017434_060 Hb_005702_030--Hb_011344_170 Hb_007307_030 Hb_007307_030 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_054328_010 Hb_054328_010 Hb_000589_400--Hb_054328_010 Hb_000589_400--Hb_000243_140 Hb_000589_400--Hb_026698_010 Hb_000589_400--Hb_007451_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
485.763 556.126 1.98647 67.3327 328.09 148.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
314.587 253.187 406.959 319.394 0.248555

CAGE analysis