Hb_000703_290

Information

Type -
Description -
Location Contig703: 287432-291164
Sequence    

Annotation

kegg
ID rcu:RCOM_0536460
description aldo/keto reductase, putative (EC:1.1.1.21)
nr
ID XP_002521589.1
description aldo/keto reductase, putative [Ricinus communis]
swissprot
ID Q94A68
description Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=2 SV=1
trembl
ID B9S6H0
description Aldo/keto reductase, putative OS=Ricinus communis GN=RCOM_0536460 PE=4 SV=1
Gene Ontology
ID GO:0009535
description uncharacterized oxidoreductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54961: 287365-291152 , PASA_asmbl_54962: 287497-291152 , PASA_asmbl_54963: 288840-291152 , PASA_asmbl_54964: 290087-290420
cDNA
(Sanger)
(ID:Location)		 008_D22.ab1: 287365-288491 , 015_J14.ab1: 287507-288787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_290 0.0 - - aldo/keto reductase, putative [Ricinus communis]
2 Hb_001348_190 0.0852378329 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
3 Hb_003752_070 0.0863996495 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
4 Hb_001623_490 0.0905335745 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
5 Hb_000663_020 0.0907648928 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000291_180 0.093293997 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
7 Hb_002218_020 0.0937684231 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
8 Hb_160271_010 0.0970849696 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
9 Hb_001195_270 0.1007338773 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
10 Hb_012779_080 0.1012575042 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
11 Hb_000826_030 0.1013098142 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
12 Hb_102948_010 0.1035216893 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
13 Hb_000181_060 0.1043573196 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
14 Hb_009476_130 0.1056695895 - - hypothetical protein VITISV_005430 [Vitis vinifera]
15 Hb_000320_190 0.106131465 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000155_170 0.1069804235 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
17 Hb_001430_020 0.1074736327 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
18 Hb_000645_180 0.1086534574 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
19 Hb_000284_130 0.1087307906 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_168893_030 0.1089593266 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000703_290 Hb_000703_290 Hb_001348_190 Hb_001348_190 Hb_000703_290--Hb_001348_190 Hb_003752_070 Hb_003752_070 Hb_000703_290--Hb_003752_070 Hb_001623_490 Hb_001623_490 Hb_000703_290--Hb_001623_490 Hb_000663_020 Hb_000663_020 Hb_000703_290--Hb_000663_020 Hb_000291_180 Hb_000291_180 Hb_000703_290--Hb_000291_180 Hb_002218_020 Hb_002218_020 Hb_000703_290--Hb_002218_020 Hb_000559_020 Hb_000559_020 Hb_001348_190--Hb_000559_020 Hb_002686_240 Hb_002686_240 Hb_001348_190--Hb_002686_240 Hb_004096_240 Hb_004096_240 Hb_001348_190--Hb_004096_240 Hb_001348_190--Hb_003752_070 Hb_000640_160 Hb_000640_160 Hb_001348_190--Hb_000640_160 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_000663_020--Hb_002218_020 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_160271_010 Hb_160271_010 Hb_000291_180--Hb_160271_010 Hb_001882_010 Hb_001882_010 Hb_000291_180--Hb_001882_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000108_020 Hb_000108_020 Hb_000291_180--Hb_000108_020 Hb_000680_010 Hb_000680_010 Hb_000291_180--Hb_000680_010 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7028 15.0121 46.1126 24.4828 16.5433 15.5603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5108 8.22414 6.3405 9.04487 37.4009

CAGE analysis