Hb_000704_020

Information

Type -
Description -
Location Contig704: 77401-78397
Sequence    

Annotation

kegg
ID rcu:RCOM_1272550
description hypothetical protein
nr
ID XP_002523678.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCF9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1272550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54990: 77412-78426
cDNA
(Sanger)
(ID:Location)		 013_C02.ab1: 77412-78358 , 044_O20.ab1: 77412-78369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000704_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004818_010 0.0332526991 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
3 Hb_004143_080 0.0509129451 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
4 Hb_003093_050 0.051778315 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
5 Hb_000815_120 0.0538655907 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_158597_010 0.0558302448 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
7 Hb_000629_110 0.0607033584 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
8 Hb_081344_010 0.0668154385 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_000433_040 0.0671761309 - - -
10 Hb_002301_070 0.0673342734 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_010666_020 0.0701004633 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
12 Hb_005736_030 0.0703399808 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
13 Hb_029584_020 0.0707783247 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000152_300 0.070921528 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
15 Hb_010697_020 0.074066508 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001097_110 0.0758380113 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_000530_060 0.076809241 - - -
18 Hb_000940_060 0.0772154791 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
19 Hb_001951_050 0.0794866629 - - chlorophyll A/B binding protein, putative [Ricinus communis]
20 Hb_000928_260 0.0804059961 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]

Gene co-expression network

sample Hb_000704_020 Hb_000704_020 Hb_004818_010 Hb_004818_010 Hb_000704_020--Hb_004818_010 Hb_004143_080 Hb_004143_080 Hb_000704_020--Hb_004143_080 Hb_003093_050 Hb_003093_050 Hb_000704_020--Hb_003093_050 Hb_000815_120 Hb_000815_120 Hb_000704_020--Hb_000815_120 Hb_158597_010 Hb_158597_010 Hb_000704_020--Hb_158597_010 Hb_000629_110 Hb_000629_110 Hb_000704_020--Hb_000629_110 Hb_004818_010--Hb_003093_050 Hb_004818_010--Hb_004143_080 Hb_029584_020 Hb_029584_020 Hb_004818_010--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_004818_010--Hb_000530_060 Hb_004818_010--Hb_000815_120 Hb_004143_080--Hb_000815_120 Hb_004143_080--Hb_003093_050 Hb_002301_070 Hb_002301_070 Hb_004143_080--Hb_002301_070 Hb_001951_050 Hb_001951_050 Hb_004143_080--Hb_001951_050 Hb_003093_050--Hb_029584_020 Hb_003093_050--Hb_000629_110 Hb_003093_050--Hb_000530_060 Hb_000815_120--Hb_001951_050 Hb_000815_120--Hb_002301_070 Hb_000815_120--Hb_003093_050 Hb_000940_060 Hb_000940_060 Hb_158597_010--Hb_000940_060 Hb_000433_040 Hb_000433_040 Hb_158597_010--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_158597_010--Hb_081344_010 Hb_010666_020 Hb_010666_020 Hb_158597_010--Hb_010666_020 Hb_000152_300 Hb_000152_300 Hb_158597_010--Hb_000152_300 Hb_158597_010--Hb_004818_010 Hb_000629_110--Hb_004818_010 Hb_000629_110--Hb_004143_080 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_005736_030 Hb_005736_030 Hb_000629_110--Hb_005736_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.280961 8.25584 7.39592 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198831 0 0 0 42.7399

CAGE analysis