Hb_000704_030

Information

Type -
Description -
Location Contig704: 79756-80801
Sequence    

Annotation

kegg
ID cam:101494876
description probable aquaporin SIP2-1-like
nr
ID XP_004493299.1
description PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
swissprot
ID Q9M1K3
description Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1
trembl
ID B9IHH4
description Aquaporin SIP2.1 family protein OS=Populus trichocarpa GN=POPTR_0016s02560g PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable aquaporin sip2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54991: 79787-98506 , PASA_asmbl_54992: 80849-81229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000704_030 0.0 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
2 Hb_000120_810 0.0626298055 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
3 Hb_189216_010 0.0778837342 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
4 Hb_005563_070 0.0791276196 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
5 Hb_007839_020 0.0813388091 - - conserved hypothetical protein [Ricinus communis]
6 Hb_172426_030 0.0819442794 - - acetylglucosaminyltransferase, putative [Ricinus communis]
7 Hb_026198_010 0.0884545089 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
8 Hb_000603_160 0.091388194 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
9 Hb_000680_120 0.0919602599 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
10 Hb_004079_130 0.0932359261 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
11 Hb_000012_240 0.0943814249 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
12 Hb_000983_050 0.0967804416 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000711_010 0.1006406788 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
14 Hb_002203_030 0.1017420415 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
15 Hb_003626_070 0.1023134897 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
16 Hb_000227_390 0.1037599707 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
17 Hb_012262_030 0.1038993652 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
18 Hb_000666_010 0.1044609382 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001140_090 0.1064238255 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010407_080 0.1065208422 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000704_030 Hb_000704_030 Hb_000120_810 Hb_000120_810 Hb_000704_030--Hb_000120_810 Hb_189216_010 Hb_189216_010 Hb_000704_030--Hb_189216_010 Hb_005563_070 Hb_005563_070 Hb_000704_030--Hb_005563_070 Hb_007839_020 Hb_007839_020 Hb_000704_030--Hb_007839_020 Hb_172426_030 Hb_172426_030 Hb_000704_030--Hb_172426_030 Hb_026198_010 Hb_026198_010 Hb_000704_030--Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_189216_010--Hb_005563_070 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_005563_070--Hb_000603_160 Hb_001141_420 Hb_001141_420 Hb_005563_070--Hb_001141_420 Hb_005162_090 Hb_005162_090 Hb_005563_070--Hb_005162_090 Hb_002572_020 Hb_002572_020 Hb_005563_070--Hb_002572_020 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_001329_200 Hb_001329_200 Hb_007839_020--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_172426_030--Hb_189216_010 Hb_172426_030--Hb_002471_090 Hb_012262_030 Hb_012262_030 Hb_172426_030--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_172426_030--Hb_000367_090 Hb_000227_160 Hb_000227_160 Hb_172426_030--Hb_000227_160 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54021 13.7553 13.3265 16.7034 3.15045 3.90277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2422 7.4053 6.1097 9.45503 10.7547

CAGE analysis