Hb_000705_010

Information

Type -
Description -
Location Contig705: 5286-15771
Sequence    

Annotation

kegg
ID cic:CICLE_v10027296mg
description hypothetical protein
nr
ID XP_006427829.1
description hypothetical protein CICLE_v10027296mg [Citrus clementina]
swissprot
ID U3UA11
description UDP-glucose iridoid glucosyltransferase OS=Catharanthus roseus GN=UGT76A2 PE=1 SV=1
trembl
ID V4UNP5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027296mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55057: 13375-13643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_010 0.0 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
2 Hb_063405_010 0.0738933441 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
3 Hb_080922_010 0.0776017803 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_000270_090 0.0884221751 - - nitrate transporter, putative [Ricinus communis]
5 Hb_001321_010 0.0936706961 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
6 Hb_000697_020 0.0960716246 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
7 Hb_002010_030 0.0966427529 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_061126_010 0.0989619897 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_011104_020 0.1002698424 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
10 Hb_003536_020 0.1030589105 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
11 Hb_003937_010 0.1037023794 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
12 Hb_004374_100 0.1047436942 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
13 Hb_000280_030 0.1051855533 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_046739_010 0.1061166251 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
15 Hb_000483_430 0.1069775975 - - -
16 Hb_004994_030 0.1093171787 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
17 Hb_002407_090 0.1107894055 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
18 Hb_001172_150 0.1114604915 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_000445_270 0.1119614585 - - ATP binding protein, putative [Ricinus communis]
20 Hb_015824_010 0.1136343706 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_010 Hb_000705_010 Hb_063405_010 Hb_063405_010 Hb_000705_010--Hb_063405_010 Hb_080922_010 Hb_080922_010 Hb_000705_010--Hb_080922_010 Hb_000270_090 Hb_000270_090 Hb_000705_010--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_000705_010--Hb_001321_010 Hb_000697_020 Hb_000697_020 Hb_000705_010--Hb_000697_020 Hb_002010_030 Hb_002010_030 Hb_000705_010--Hb_002010_030 Hb_003937_010 Hb_003937_010 Hb_063405_010--Hb_003937_010 Hb_003777_090 Hb_003777_090 Hb_063405_010--Hb_003777_090 Hb_063405_010--Hb_001321_010 Hb_063405_010--Hb_000270_090 Hb_063405_010--Hb_000697_020 Hb_003536_020 Hb_003536_020 Hb_080922_010--Hb_003536_020 Hb_000445_270 Hb_000445_270 Hb_080922_010--Hb_000445_270 Hb_007477_060 Hb_007477_060 Hb_080922_010--Hb_007477_060 Hb_002871_180 Hb_002871_180 Hb_080922_010--Hb_002871_180 Hb_005329_010 Hb_005329_010 Hb_080922_010--Hb_005329_010 Hb_000270_090--Hb_001321_010 Hb_004994_030 Hb_004994_030 Hb_000270_090--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_000270_090--Hb_011104_020 Hb_001699_140 Hb_001699_140 Hb_000270_090--Hb_001699_140 Hb_002007_220 Hb_002007_220 Hb_000270_090--Hb_002007_220 Hb_002407_090 Hb_002407_090 Hb_000270_090--Hb_002407_090 Hb_001321_010--Hb_004994_030 Hb_001321_010--Hb_011104_020 Hb_001321_010--Hb_002007_220 Hb_018591_020 Hb_018591_020 Hb_001321_010--Hb_018591_020 Hb_001321_010--Hb_002407_090 Hb_061126_010 Hb_061126_010 Hb_000697_020--Hb_061126_010 Hb_016687_010 Hb_016687_010 Hb_000697_020--Hb_016687_010 Hb_001172_150 Hb_001172_150 Hb_000697_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_000697_020--Hb_000212_270 Hb_003767_060 Hb_003767_060 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_005433_020 Hb_005433_020 Hb_002010_030--Hb_005433_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0953295 0.367725 0.0816666 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0382765 0.451901

CAGE analysis