Hb_000705_070

Information

Type -
Description -
Location Contig705: 65787-66168
Sequence    

Annotation

kegg
ID rcu:RCOM_0731860
description hypothetical protein
nr
ID XP_002520471.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3A2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731860 PE=4 SV=1
Gene Ontology
ID GO:0016787
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 021_K22r.ab1: 57122-70153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001322_010 0.1063136749 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
3 Hb_000860_030 0.108030008 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000840_220 0.117116701 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
5 Hb_000638_110 0.1174619501 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
6 Hb_003582_010 0.1231965941 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
7 Hb_001775_060 0.1243724154 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000563_570 0.1244436906 - - hypothetical protein JCGZ_18895 [Jatropha curcas]
9 Hb_001013_060 0.1303189013 - - -
10 Hb_001255_030 0.1351277935 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
11 Hb_103632_010 0.1374948576 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_004757_040 0.1427377453 - - -
13 Hb_022597_010 0.1442501387 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
14 Hb_009225_070 0.1454180547 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_156850_040 0.145727266 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
16 Hb_005396_030 0.1482021979 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000720_060 0.1485873605 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
18 Hb_011314_010 0.1490094674 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
19 Hb_005056_120 0.153394493 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_186495_010 0.1542755792 - - Phosphoprotein phosphatase [Theobroma cacao]

Gene co-expression network

sample Hb_000705_070 Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_000705_070--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_000705_070--Hb_000860_030 Hb_000840_220 Hb_000840_220 Hb_000705_070--Hb_000840_220 Hb_000638_110 Hb_000638_110 Hb_000705_070--Hb_000638_110 Hb_003582_010 Hb_003582_010 Hb_000705_070--Hb_003582_010 Hb_001775_060 Hb_001775_060 Hb_000705_070--Hb_001775_060 Hb_022597_010 Hb_022597_010 Hb_001322_010--Hb_022597_010 Hb_001322_010--Hb_000860_030 Hb_156850_040 Hb_156850_040 Hb_001322_010--Hb_156850_040 Hb_001322_010--Hb_000638_110 Hb_000740_080 Hb_000740_080 Hb_001322_010--Hb_000740_080 Hb_000860_030--Hb_022597_010 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_000563_570 Hb_000563_570 Hb_000840_220--Hb_000563_570 Hb_001013_060 Hb_001013_060 Hb_000840_220--Hb_001013_060 Hb_006890_050 Hb_006890_050 Hb_000840_220--Hb_006890_050 Hb_005900_020 Hb_005900_020 Hb_000840_220--Hb_005900_020 Hb_000840_220--Hb_003582_010 Hb_001141_010 Hb_001141_010 Hb_000638_110--Hb_001141_010 Hb_103632_010 Hb_103632_010 Hb_000638_110--Hb_103632_010 Hb_002835_120 Hb_002835_120 Hb_000638_110--Hb_002835_120 Hb_004757_040 Hb_004757_040 Hb_000638_110--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_000638_110--Hb_002837_150 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_003582_010--Hb_001322_010 Hb_003582_010--Hb_001013_060 Hb_034688_030 Hb_034688_030 Hb_001775_060--Hb_034688_030 Hb_002627_010 Hb_002627_010 Hb_001775_060--Hb_002627_010 Hb_003126_120 Hb_003126_120 Hb_001775_060--Hb_003126_120 Hb_002592_070 Hb_002592_070 Hb_001775_060--Hb_002592_070 Hb_001775_060--Hb_003582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1532 346.08 53.5325 1060.87 2.55601 16.8637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.129 1.62231 1.07813 104.851 59.8113

CAGE analysis