Hb_000705_090

Information

Type -
Description -
Location Contig705: 67216-87023
Sequence    

Annotation

kegg
ID vvi:100246830
description uncharacterized LOC100246830
nr
ID XP_002281694.2
description PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
swissprot
ID Q54YN2
description Maleylacetoacetate isomerase OS=Dictyostelium discoideum GN=mai PE=3 SV=1
trembl
ID A0A0D9YK17
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55061: 57122-70228 , PASA_asmbl_55062: 69325-70228 , PASA_asmbl_55063: 72340-73807 , PASA_asmbl_55064: 75228-75587 , PASA_asmbl_55065: 75520-76262
cDNA
(Sanger)
(ID:Location)		 002_J15.ab1: 69325-70228 , 021_K22.ab1: 57169-70228 , 026_L11.ab1: 69404-70228 , 048_B18.ab1: 69351-70228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_090 0.0 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
2 Hb_106321_010 0.1193986065 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
3 Hb_000215_420 0.1264844499 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
4 Hb_000705_100 0.1317220896 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_164300_010 0.1446774814 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_005168_030 0.1476200938 - - unknown [Zea mays]
7 Hb_002003_030 0.1532301079 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
8 Hb_000101_370 0.1536627653 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
9 Hb_000705_060 0.1579264614 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
10 Hb_006573_260 0.1618438375 - - -
11 Hb_001101_020 0.171038108 - - hypothetical protein RCOM_0615680 [Ricinus communis]
12 Hb_123560_020 0.175974857 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
13 Hb_129204_050 0.1798028532 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
14 Hb_116469_010 0.1802977137 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
15 Hb_005614_030 0.1852106251 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
16 Hb_002603_030 0.1865946293 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
17 Hb_111985_120 0.1892450664 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
18 Hb_004519_010 0.1925313978 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
19 Hb_001775_050 0.1936948345 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
20 Hb_002960_010 0.1968045169 - - Zeamatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000705_090 Hb_000705_090 Hb_106321_010 Hb_106321_010 Hb_000705_090--Hb_106321_010 Hb_000215_420 Hb_000215_420 Hb_000705_090--Hb_000215_420 Hb_000705_100 Hb_000705_100 Hb_000705_090--Hb_000705_100 Hb_164300_010 Hb_164300_010 Hb_000705_090--Hb_164300_010 Hb_005168_030 Hb_005168_030 Hb_000705_090--Hb_005168_030 Hb_002003_030 Hb_002003_030 Hb_000705_090--Hb_002003_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_106321_010--Hb_000215_420 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_106321_010--Hb_002003_030 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000215_420--Hb_000705_100 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_129204_050 Hb_129204_050 Hb_000705_100--Hb_129204_050 Hb_000705_060 Hb_000705_060 Hb_000705_100--Hb_000705_060 Hb_001101_020 Hb_001101_020 Hb_000705_100--Hb_001101_020 Hb_001775_050 Hb_001775_050 Hb_000705_100--Hb_001775_050 Hb_164300_010--Hb_000101_370 Hb_002081_220 Hb_002081_220 Hb_164300_010--Hb_002081_220 Hb_010053_010 Hb_010053_010 Hb_164300_010--Hb_010053_010 Hb_164300_010--Hb_000215_420 Hb_024948_010 Hb_024948_010 Hb_164300_010--Hb_024948_010 Hb_005168_030--Hb_123560_020 Hb_005168_030--Hb_011440_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_005168_030--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_002003_030--Hb_116469_010 Hb_150730_010 Hb_150730_010 Hb_002003_030--Hb_150730_010 Hb_009778_050 Hb_009778_050 Hb_002003_030--Hb_009778_050 Hb_000057_180 Hb_000057_180 Hb_002003_030--Hb_000057_180 Hb_011861_020 Hb_011861_020 Hb_002003_030--Hb_011861_020 Hb_000471_010 Hb_000471_010 Hb_002003_030--Hb_000471_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822221 0.867271 5.48198 0.566443 0.0652607 0.101697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0395822 0 0 8.33663 0.99057

CAGE analysis