Hb_000705_100

Information

Type -
Description -
Location Contig705: 87096-89057
Sequence    

Annotation

kegg
ID rcu:RCOM_0731950
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002520480.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9ZW24
description Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1
trembl
ID B9S3B1
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0731950 PE=3 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55066: 88375-89043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_100 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_129204_050 0.0969966055 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
3 Hb_000705_060 0.1221951984 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
4 Hb_000215_420 0.1236539138 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
5 Hb_000705_090 0.1317220896 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
6 Hb_001101_020 0.1431484364 - - hypothetical protein RCOM_0615680 [Ricinus communis]
7 Hb_001775_050 0.1605265411 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
8 Hb_000101_370 0.1709092811 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
9 Hb_106321_010 0.1718750289 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
10 Hb_164300_010 0.1751087165 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
11 Hb_002003_030 0.1789677397 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
12 Hb_111985_120 0.1867755508 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
13 Hb_002989_030 0.1872996474 - - PREDICTED: protein GAST1-like [Populus euphratica]
14 Hb_007645_110 0.1882484219 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
15 Hb_001789_010 0.1901035892 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
16 Hb_001369_320 0.193840546 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
17 Hb_005168_030 0.1943505195 - - unknown [Zea mays]
18 Hb_001377_480 0.2023031759 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
19 Hb_116469_010 0.2023760324 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
20 Hb_020902_020 0.2134002306 - - hypothetical protein JCGZ_07820 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_100 Hb_000705_100 Hb_129204_050 Hb_129204_050 Hb_000705_100--Hb_129204_050 Hb_000705_060 Hb_000705_060 Hb_000705_100--Hb_000705_060 Hb_000215_420 Hb_000215_420 Hb_000705_100--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_000705_100--Hb_000705_090 Hb_001101_020 Hb_001101_020 Hb_000705_100--Hb_001101_020 Hb_001775_050 Hb_001775_050 Hb_000705_100--Hb_001775_050 Hb_129204_050--Hb_001775_050 Hb_129204_050--Hb_000705_060 Hb_129204_050--Hb_001101_020 Hb_001369_320 Hb_001369_320 Hb_129204_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_129204_050--Hb_000057_160 Hb_000705_060--Hb_000215_420 Hb_000705_060--Hb_001775_050 Hb_000705_060--Hb_001369_320 Hb_000705_060--Hb_000705_090 Hb_106321_010 Hb_106321_010 Hb_000215_420--Hb_106321_010 Hb_000101_370 Hb_000101_370 Hb_000215_420--Hb_000101_370 Hb_004519_010 Hb_004519_010 Hb_000215_420--Hb_004519_010 Hb_000215_420--Hb_000705_090 Hb_001019_210 Hb_001019_210 Hb_000215_420--Hb_001019_210 Hb_000705_090--Hb_106321_010 Hb_164300_010 Hb_164300_010 Hb_000705_090--Hb_164300_010 Hb_005168_030 Hb_005168_030 Hb_000705_090--Hb_005168_030 Hb_002003_030 Hb_002003_030 Hb_000705_090--Hb_002003_030 Hb_001377_480 Hb_001377_480 Hb_001101_020--Hb_001377_480 Hb_142522_030 Hb_142522_030 Hb_001101_020--Hb_142522_030 Hb_111985_120 Hb_111985_120 Hb_001101_020--Hb_111985_120 Hb_001789_010 Hb_001789_010 Hb_001101_020--Hb_001789_010 Hb_187211_010 Hb_187211_010 Hb_001101_020--Hb_187211_010 Hb_020902_020 Hb_020902_020 Hb_001775_050--Hb_020902_020 Hb_001775_050--Hb_001369_320 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_001454_300 Hb_001454_300 Hb_001775_050--Hb_001454_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.130024 0.863489 0.0241225 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.46176 0.0975529

CAGE analysis