Hb_000705_130

Information

Type -
Description -
Location Contig705: 97206-103657
Sequence    

Annotation

kegg
ID rcu:RCOM_0732000
description hypothetical protein
nr
ID XP_002520485.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3B6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0732000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55070: 97159-99577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_015882_020 0.0894404367 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
3 Hb_000027_060 0.0896496859 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
4 Hb_000331_710 0.094782548 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_008040_060 0.1035818322 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
6 Hb_001534_150 0.1052950388 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
7 Hb_000522_130 0.1076984675 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
8 Hb_003914_050 0.1104707867 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_010921_060 0.1142439055 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000819_010 0.1151784753 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
11 Hb_033312_090 0.1157681544 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
12 Hb_013720_010 0.1212651881 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
13 Hb_000347_380 0.1250492266 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_004880_100 0.1256788403 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
15 Hb_000002_100 0.1315886252 - - phosphate transporter [Manihot esculenta]
16 Hb_000333_120 0.1333047051 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
17 Hb_000412_090 0.1339254919 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_107552_020 0.1366728168 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
19 Hb_006052_040 0.136819199 - - pyruvate decarboxylase [Hevea brasiliensis]
20 Hb_002890_320 0.1374385128 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_130 Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000027_060 Hb_000027_060 Hb_000705_130--Hb_000027_060 Hb_000331_710 Hb_000331_710 Hb_000705_130--Hb_000331_710 Hb_008040_060 Hb_008040_060 Hb_000705_130--Hb_008040_060 Hb_001534_150 Hb_001534_150 Hb_000705_130--Hb_001534_150 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130 Hb_033312_090 Hb_033312_090 Hb_015882_020--Hb_033312_090 Hb_015882_020--Hb_000522_130 Hb_015882_020--Hb_000027_060 Hb_015882_020--Hb_001534_150 Hb_004030_070 Hb_004030_070 Hb_015882_020--Hb_004030_070 Hb_000027_060--Hb_001534_150 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050 Hb_000331_710--Hb_013720_010 Hb_000247_150 Hb_000247_150 Hb_000331_710--Hb_000247_150 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_006698_020 Hb_006698_020 Hb_000331_710--Hb_006698_020 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_003914_050 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030 Hb_030370_070 Hb_030370_070 Hb_001534_150--Hb_030370_070 Hb_107552_020 Hb_107552_020 Hb_001534_150--Hb_107552_020 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_000522_130--Hb_033312_090 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0404167 25.5891 6.45758 4.042 0.190841 0.2308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.085128 0 0 4.54872 5.95135

CAGE analysis