Hb_000705_160

Information

Type -
Description -
Location Contig705: 109357-112873
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO35869.1
description hypothetical protein CISIN_1g042743mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067CYT8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042743mg PE=4 SV=1
Gene Ontology
ID GO:0044237
description transcription elongation factor b polypeptide 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_160 0.0 - - hypothetical protein CISIN_1g042743mg [Citrus sinensis]
2 Hb_003992_170 0.1697336518 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
3 Hb_000062_560 0.1793289628 - - conserved hypothetical protein [Ricinus communis]
4 Hb_017110_010 0.1949957579 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
5 Hb_000836_040 0.1995369626 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_000749_270 0.1997077041 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
7 Hb_005162_070 0.201762783 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001946_330 0.2024354481 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
9 Hb_000313_210 0.2029631847 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010407_180 0.2064179635 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
11 Hb_002027_040 0.20773086 - - synapse-associated protein, putative [Ricinus communis]
12 Hb_000260_570 0.2090489557 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_030565_030 0.2102459798 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
14 Hb_175557_010 0.2108532693 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
15 Hb_034013_020 0.2109983214 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
16 Hb_000805_290 0.2129974217 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
17 Hb_001544_030 0.2141747571 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
18 Hb_021409_160 0.2145383289 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
19 Hb_000120_960 0.2147940817 - - isocitrate dehydrogenase, putative [Ricinus communis]
20 Hb_000392_310 0.2155169516 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000705_160 Hb_000705_160 Hb_003992_170 Hb_003992_170 Hb_000705_160--Hb_003992_170 Hb_000062_560 Hb_000062_560 Hb_000705_160--Hb_000062_560 Hb_017110_010 Hb_017110_010 Hb_000705_160--Hb_017110_010 Hb_000836_040 Hb_000836_040 Hb_000705_160--Hb_000836_040 Hb_000749_270 Hb_000749_270 Hb_000705_160--Hb_000749_270 Hb_005162_070 Hb_005162_070 Hb_000705_160--Hb_005162_070 Hb_000059_050 Hb_000059_050 Hb_003992_170--Hb_000059_050 Hb_001946_330 Hb_001946_330 Hb_003992_170--Hb_001946_330 Hb_003992_170--Hb_000749_270 Hb_002284_310 Hb_002284_310 Hb_003992_170--Hb_002284_310 Hb_004079_030 Hb_004079_030 Hb_003992_170--Hb_004079_030 Hb_003992_170--Hb_000836_040 Hb_034013_020 Hb_034013_020 Hb_000062_560--Hb_034013_020 Hb_004968_100 Hb_004968_100 Hb_000062_560--Hb_004968_100 Hb_000500_100 Hb_000500_100 Hb_000062_560--Hb_000500_100 Hb_003582_040 Hb_003582_040 Hb_000062_560--Hb_003582_040 Hb_000417_310 Hb_000417_310 Hb_000062_560--Hb_000417_310 Hb_000629_120 Hb_000629_120 Hb_017110_010--Hb_000629_120 Hb_181288_020 Hb_181288_020 Hb_017110_010--Hb_181288_020 Hb_000161_060 Hb_000161_060 Hb_017110_010--Hb_000161_060 Hb_003032_010 Hb_003032_010 Hb_017110_010--Hb_003032_010 Hb_000138_110 Hb_000138_110 Hb_017110_010--Hb_000138_110 Hb_000479_200 Hb_000479_200 Hb_017110_010--Hb_000479_200 Hb_000258_270 Hb_000258_270 Hb_000836_040--Hb_000258_270 Hb_030565_030 Hb_030565_030 Hb_000836_040--Hb_030565_030 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000003_250 Hb_000003_250 Hb_000836_040--Hb_000003_250 Hb_004052_090 Hb_004052_090 Hb_000836_040--Hb_004052_090 Hb_000047_030 Hb_000047_030 Hb_000836_040--Hb_000047_030 Hb_004078_040 Hb_004078_040 Hb_000749_270--Hb_004078_040 Hb_001799_210 Hb_001799_210 Hb_000749_270--Hb_001799_210 Hb_000925_130 Hb_000925_130 Hb_000749_270--Hb_000925_130 Hb_000465_160 Hb_000465_160 Hb_000749_270--Hb_000465_160 Hb_009339_030 Hb_009339_030 Hb_000749_270--Hb_009339_030 Hb_000393_020 Hb_000393_020 Hb_000749_270--Hb_000393_020 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.43238 0.248029 0.176231 0.426556 0.377127 0.0803335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.294889 0.579623 1.146 0.0235176 0.462193

CAGE analysis