Hb_000705_180

Information

Type -
Description -
Location Contig705: 118370-119911
Sequence    

Annotation

kegg
ID rcu:RCOM_0732490
description Transcription elongation factor B polypeptide, putative
nr
ID KDP42193.1
description hypothetical protein JCGZ_02923 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02923 PE=4 SV=1
Gene Ontology
ID GO:0010467
description transcription elongation factor b polypeptide 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55075: 117299-119908 , PASA_asmbl_55077: 118785-119115
cDNA
(Sanger)
(ID:Location)		 022_O04.ab1: 117299-119908 , 024_A23.ab1: 117299-119904 , 024_C23.ab1: 117383-119908 , 028_N17.ab1: 117299-119904 , 033_A21.ab1: 117299-119904 , 047_L01.ab1: 117299-119884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_180 0.0 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
2 Hb_003599_030 0.0670440061 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
3 Hb_009372_020 0.0929123384 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
4 Hb_004375_110 0.0963134603 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
5 Hb_001103_090 0.0967746551 - - PREDICTED: patellin-3 [Populus euphratica]
6 Hb_001259_120 0.0987137264 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
7 Hb_028077_020 0.0993061386 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003849_220 0.099644525 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
9 Hb_009615_160 0.1016392639 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_000671_080 0.1017141167 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
11 Hb_001675_320 0.1018844611 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
12 Hb_001328_080 0.1072391605 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
13 Hb_002686_140 0.1074254357 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
14 Hb_001257_100 0.110304705 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
15 Hb_000479_110 0.1107896603 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
16 Hb_022425_030 0.1115221575 - - PREDICTED: casein kinase I [Jatropha curcas]
17 Hb_000111_370 0.1116009063 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
18 Hb_026198_060 0.111925779 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
19 Hb_001329_200 0.1121680552 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
20 Hb_024650_080 0.1121937584 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_180 Hb_000705_180 Hb_003599_030 Hb_003599_030 Hb_000705_180--Hb_003599_030 Hb_009372_020 Hb_009372_020 Hb_000705_180--Hb_009372_020 Hb_004375_110 Hb_004375_110 Hb_000705_180--Hb_004375_110 Hb_001103_090 Hb_001103_090 Hb_000705_180--Hb_001103_090 Hb_001259_120 Hb_001259_120 Hb_000705_180--Hb_001259_120 Hb_028077_020 Hb_028077_020 Hb_000705_180--Hb_028077_020 Hb_000671_080 Hb_000671_080 Hb_003599_030--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050 Hb_028077_020--Hb_001103_090 Hb_028077_020--Hb_001675_320 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_001097_040 Hb_001097_040 Hb_028077_020--Hb_001097_040 Hb_005970_010 Hb_005970_010 Hb_028077_020--Hb_005970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73223 8.61015 4.65429 8.72819 3.27001 1.36112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61157 1.67969 2.53587 5.15385 4.13344

CAGE analysis