Hb_000705_250

Information

Type -
Description -
Location Contig705: 140588-143988
Sequence    

Annotation

kegg
ID cic:CICLE_v10017607mg
description hypothetical protein
nr
ID XP_006449889.1
description hypothetical protein CICLE_v10017607mg [Citrus clementina]
swissprot
ID O81263
description Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2
trembl
ID V4WA23
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017607mg PE=3 SV=1
Gene Ontology
ID GO:0004797
description thymidine kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55084: 140483-143958
cDNA
(Sanger)
(ID:Location)		 019_P03.ab1: 140483-143285

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_250 0.0 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
2 Hb_000318_130 0.148014405 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_004218_190 0.1498593532 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
4 Hb_009486_040 0.1535135029 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005511_150 0.1542092723 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
6 Hb_003025_140 0.1579856327 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007527_010 0.160096989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000078_080 0.1609084006 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
9 Hb_002374_250 0.1621846203 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000640_260 0.162198349 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
11 Hb_000365_240 0.1637306404 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
12 Hb_008803_040 0.1661578503 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
13 Hb_006816_470 0.1664176315 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
14 Hb_010344_020 0.1667909503 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
15 Hb_171718_010 0.1672302479 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
16 Hb_000404_040 0.1698579132 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000019_200 0.170109569 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_001357_200 0.1707973942 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
19 Hb_011377_040 0.1714306937 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
20 Hb_030736_040 0.1730345781 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_250 Hb_000705_250 Hb_000318_130 Hb_000318_130 Hb_000705_250--Hb_000318_130 Hb_004218_190 Hb_004218_190 Hb_000705_250--Hb_004218_190 Hb_009486_040 Hb_009486_040 Hb_000705_250--Hb_009486_040 Hb_005511_150 Hb_005511_150 Hb_000705_250--Hb_005511_150 Hb_003025_140 Hb_003025_140 Hb_000705_250--Hb_003025_140 Hb_007527_010 Hb_007527_010 Hb_000705_250--Hb_007527_010 Hb_004375_050 Hb_004375_050 Hb_000318_130--Hb_004375_050 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_005147_080 Hb_005147_080 Hb_000318_130--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_000318_130--Hb_002290_030 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_000300_470 Hb_000300_470 Hb_004218_190--Hb_000300_470 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_005250_010 Hb_005250_010 Hb_004218_190--Hb_005250_010 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_007101_080 Hb_007101_080 Hb_004218_190--Hb_007101_080 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040 Hb_000230_290 Hb_000230_290 Hb_009486_040--Hb_000230_290 Hb_003952_060 Hb_003952_060 Hb_009486_040--Hb_003952_060 Hb_009486_040--Hb_003025_140 Hb_000078_080 Hb_000078_080 Hb_009486_040--Hb_000078_080 Hb_003607_070 Hb_003607_070 Hb_009486_040--Hb_003607_070 Hb_002055_040 Hb_002055_040 Hb_009486_040--Hb_002055_040 Hb_009178_060 Hb_009178_060 Hb_005511_150--Hb_009178_060 Hb_002374_250 Hb_002374_250 Hb_005511_150--Hb_002374_250 Hb_001009_260 Hb_001009_260 Hb_005511_150--Hb_001009_260 Hb_000025_500 Hb_000025_500 Hb_005511_150--Hb_000025_500 Hb_013749_050 Hb_013749_050 Hb_005511_150--Hb_013749_050 Hb_002232_390 Hb_002232_390 Hb_005511_150--Hb_002232_390 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_000809_020 Hb_000809_020 Hb_007527_010--Hb_000809_020 Hb_001357_200 Hb_001357_200 Hb_007527_010--Hb_001357_200 Hb_011618_070 Hb_011618_070 Hb_007527_010--Hb_011618_070 Hb_111552_010 Hb_111552_010 Hb_007527_010--Hb_111552_010 Hb_004774_090 Hb_004774_090 Hb_007527_010--Hb_004774_090 Hb_001014_070 Hb_001014_070 Hb_007527_010--Hb_001014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51805 2.68246 5.02579 3.57472 1.34488 2.4575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.824654 1.35332 7.26934 3.79982 10.879

CAGE analysis