Hb_000705_320

Information

Type -
Description -
Location Contig705: 224657-225148
Sequence    

Annotation

kegg
ID rcu:RCOM_0733120
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_002520514.1
description Transcriptional regulator SUPERMAN, putative [Ricinus communis]
swissprot
ID Q9LHS9
description Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2
trembl
ID B9S3E5
description Transcriptional regulator SUPERMAN, putative OS=Ricinus communis GN=RCOM_0733120 PE=4 SV=1
Gene Ontology
ID GO:0005488
description rabbit ears family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_320 0.0 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
2 Hb_000345_090 0.0026895241 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
3 Hb_005625_030 0.0030549515 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
4 Hb_027556_050 0.0031906762 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
5 Hb_070810_010 0.0032240517 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_080359_020 0.0033552523 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
7 Hb_000724_010 0.0040593927 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
8 Hb_001031_100 0.0045751297 - - -
9 Hb_002596_100 0.0056282735 - - -
10 Hb_003687_050 0.0057664459 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000441_240 0.0063105498 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
12 Hb_001031_070 0.0065023977 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
13 Hb_071079_030 0.0068903353 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
14 Hb_001048_120 0.0069303611 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_000938_010 0.0081420589 - - polyprotein [Oryza australiensis]
16 Hb_002671_070 0.0087674867 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
17 Hb_005946_130 0.0087674867 - - -
18 Hb_159542_010 0.0106616896 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_000696_180 0.0121113829 - - cysteine protease, putative [Ricinus communis]
20 Hb_011444_050 0.0151131823 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_000705_320 Hb_000705_320 Hb_000345_090 Hb_000345_090 Hb_000705_320--Hb_000345_090 Hb_005625_030 Hb_005625_030 Hb_000705_320--Hb_005625_030 Hb_027556_050 Hb_027556_050 Hb_000705_320--Hb_027556_050 Hb_070810_010 Hb_070810_010 Hb_000705_320--Hb_070810_010 Hb_080359_020 Hb_080359_020 Hb_000705_320--Hb_080359_020 Hb_000724_010 Hb_000724_010 Hb_000705_320--Hb_000724_010 Hb_000345_090--Hb_027556_050 Hb_000345_090--Hb_080359_020 Hb_000345_090--Hb_000724_010 Hb_001031_100 Hb_001031_100 Hb_000345_090--Hb_001031_100 Hb_002596_100 Hb_002596_100 Hb_000345_090--Hb_002596_100 Hb_005625_030--Hb_070810_010 Hb_001048_120 Hb_001048_120 Hb_005625_030--Hb_001048_120 Hb_002671_070 Hb_002671_070 Hb_005625_030--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_005625_030--Hb_005946_130 Hb_005625_030--Hb_000345_090 Hb_027556_050--Hb_080359_020 Hb_027556_050--Hb_000724_010 Hb_027556_050--Hb_001031_100 Hb_027556_050--Hb_002596_100 Hb_003687_050 Hb_003687_050 Hb_027556_050--Hb_003687_050 Hb_070810_010--Hb_001048_120 Hb_070810_010--Hb_002671_070 Hb_070810_010--Hb_005946_130 Hb_070810_010--Hb_000345_090 Hb_080359_020--Hb_000724_010 Hb_080359_020--Hb_001031_100 Hb_080359_020--Hb_002596_100 Hb_080359_020--Hb_003687_050 Hb_000724_010--Hb_001031_100 Hb_000724_010--Hb_002596_100 Hb_000724_010--Hb_003687_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0906393 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0901667 0

CAGE analysis