Hb_000707_030

Information

Type -
Description -
Location Contig707: 32299-40015
Sequence    

Annotation

kegg
ID vvi:100263076
description probable proteasome inhibitor
nr
ID XP_002275006.1
description PREDICTED: probable proteasome inhibitor [Vitis vinifera]
swissprot
ID Q9M330
description Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=1 SV=1
trembl
ID D7THF7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g01340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55136: 28888-40059 , PASA_asmbl_55137: 28908-40067 , PASA_asmbl_55139: 34502-34589
cDNA
(Sanger)
(ID:Location)		 007_K02.ab1: 30698-39960 , 017_I20.ab1: 39615-40012 , 042_J21.ab1: 31045-39960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_030 0.0 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
2 Hb_009793_010 0.073555241 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
3 Hb_004032_100 0.0741434346 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
4 Hb_007735_030 0.0774741058 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
5 Hb_000331_450 0.0787195436 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
6 Hb_002296_040 0.0792403495 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
7 Hb_004032_010 0.0799155195 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
8 Hb_001584_190 0.0852483356 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
9 Hb_001814_050 0.0897205369 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001505_020 0.0905407675 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
11 Hb_002284_240 0.0911474187 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
12 Hb_000009_460 0.0930666293 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033834_040 0.0935496387 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006816_530 0.0935690059 - - 60S ribosomal protein L18, putative [Ricinus communis]
15 Hb_000656_170 0.094063469 - - lsm1, putative [Ricinus communis]
16 Hb_000007_100 0.0959549883 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
17 Hb_015175_030 0.0962028233 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
18 Hb_009554_010 0.0967501514 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
19 Hb_000003_730 0.0971019443 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
20 Hb_000135_060 0.1005635028 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000707_030 Hb_000707_030 Hb_009793_010 Hb_009793_010 Hb_000707_030--Hb_009793_010 Hb_004032_100 Hb_004032_100 Hb_000707_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_000707_030--Hb_007735_030 Hb_000331_450 Hb_000331_450 Hb_000707_030--Hb_000331_450 Hb_002296_040 Hb_002296_040 Hb_000707_030--Hb_002296_040 Hb_004032_010 Hb_004032_010 Hb_000707_030--Hb_004032_010 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_007735_030--Hb_004032_100 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_007735_030--Hb_002296_040 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5231 19.2552 15.2452 48.8606 40.0487 62.7417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.2044 94.7201 48.4824 38.6947 13.1709

CAGE analysis