Hb_000707_060

Information

Type -
Description -
Location Contig707: 66061-69009
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55143: 66054-69065 , PASA_asmbl_55144: 67253-69065 , PASA_asmbl_55145: 67589-69065 , PASA_asmbl_55146: 66054-67662 , PASA_asmbl_55147: 67253-67634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_060 0.0 - - -
2 Hb_134951_010 0.1118157303 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_002284_280 0.1160975634 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
4 Hb_000227_250 0.120480697 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
5 Hb_001486_080 0.1232968691 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
6 Hb_000732_140 0.1266066203 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
7 Hb_009393_220 0.129009178 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
8 Hb_024071_010 0.1363579756 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_000181_120 0.1389063248 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
10 Hb_001828_200 0.1406407386 - - ribosomal protein L13 [Populus trichocarpa]
11 Hb_042509_030 0.1410385172 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
12 Hb_000140_330 0.143820153 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
13 Hb_010738_010 0.1441332013 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_000567_210 0.1445806575 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
15 Hb_003126_030 0.1457572443 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000890_040 0.1469883957 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
17 Hb_000926_310 0.1481628376 - - uncharacterized protein LOC100500241 [Glycine max]
18 Hb_000407_040 0.150654735 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
19 Hb_005137_050 0.1507148209 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
20 Hb_011930_110 0.1515519013 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000707_060 Hb_000707_060 Hb_134951_010 Hb_134951_010 Hb_000707_060--Hb_134951_010 Hb_002284_280 Hb_002284_280 Hb_000707_060--Hb_002284_280 Hb_000227_250 Hb_000227_250 Hb_000707_060--Hb_000227_250 Hb_001486_080 Hb_001486_080 Hb_000707_060--Hb_001486_080 Hb_000732_140 Hb_000732_140 Hb_000707_060--Hb_000732_140 Hb_009393_220 Hb_009393_220 Hb_000707_060--Hb_009393_220 Hb_134951_010--Hb_001486_080 Hb_001828_200 Hb_001828_200 Hb_134951_010--Hb_001828_200 Hb_001898_230 Hb_001898_230 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_134951_010--Hb_002284_280 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140 Hb_005675_040 Hb_005675_040 Hb_002284_280--Hb_005675_040 Hb_003052_140 Hb_003052_140 Hb_002284_280--Hb_003052_140 Hb_010738_010 Hb_010738_010 Hb_002284_280--Hb_010738_010 Hb_000796_180 Hb_000796_180 Hb_002284_280--Hb_000796_180 Hb_003609_030 Hb_003609_030 Hb_002284_280--Hb_003609_030 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_001652_080 Hb_001652_080 Hb_000227_250--Hb_001652_080 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_001486_080--Hb_007982_070 Hb_008554_120 Hb_008554_120 Hb_001486_080--Hb_008554_120 Hb_001486_080--Hb_005883_010 Hb_077562_050 Hb_077562_050 Hb_000732_140--Hb_077562_050 Hb_000567_210 Hb_000567_210 Hb_000732_140--Hb_000567_210 Hb_000732_140--Hb_002301_220 Hb_000453_170 Hb_000453_170 Hb_000732_140--Hb_000453_170 Hb_005188_050 Hb_005188_050 Hb_000732_140--Hb_005188_050 Hb_000085_100 Hb_000085_100 Hb_000732_140--Hb_000085_100 Hb_011930_110 Hb_011930_110 Hb_009393_220--Hb_011930_110 Hb_004440_040 Hb_004440_040 Hb_009393_220--Hb_004440_040 Hb_008103_110 Hb_008103_110 Hb_009393_220--Hb_008103_110 Hb_010012_010 Hb_010012_010 Hb_009393_220--Hb_010012_010 Hb_000120_270 Hb_000120_270 Hb_009393_220--Hb_000120_270 Hb_003728_040 Hb_003728_040 Hb_009393_220--Hb_003728_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.41388 6.3333 4.41458 0.803078 4.34848 2.85862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63689 3.55367 4.47059 1.3925 2.09907

CAGE analysis