Hb_000707_080

Information

Type -
Description -
Location Contig707: 95250-97593
Sequence    

Annotation

kegg
ID mus:103996574
description uncharacterized protein LOC103996574
nr
ID KFK36688.1
description hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
swissprot
ID Q84WG0
description Protein NRT1/ PTR FAMILY 8.4 OS=Arabidopsis thaliana GN=NPF8.4 PE=2 SV=2
trembl
ID A0A087H3I6
description Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AA4G156500 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55148: 96917-97109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_080 0.0 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
2 Hb_000762_020 0.1305087687 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
3 Hb_000920_140 0.1396915917 - - annexin [Manihot esculenta]
4 Hb_001140_160 0.1436707677 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_001631_070 0.1471071851 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000957_040 0.148170357 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_012347_010 0.1589955456 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
8 Hb_002027_300 0.1638851413 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
9 Hb_000548_040 0.165254336 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
10 Hb_019516_040 0.1652931013 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
11 Hb_001017_090 0.1681276622 - - -
12 Hb_004032_440 0.1691233968 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
13 Hb_003018_180 0.1714626901 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
14 Hb_004545_150 0.1735122072 - - PREDICTED: paramyosin [Jatropha curcas]
15 Hb_010931_100 0.17380457 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_004738_090 0.1745671067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023988_020 0.1751642719 - - PREDICTED: transmembrane protein 19 [Prunus mume]
18 Hb_000376_110 0.1752733408 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
19 Hb_000720_180 0.178226647 - - -
20 Hb_003745_010 0.1784565155 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]

Gene co-expression network

sample Hb_000707_080 Hb_000707_080 Hb_000762_020 Hb_000762_020 Hb_000707_080--Hb_000762_020 Hb_000920_140 Hb_000920_140 Hb_000707_080--Hb_000920_140 Hb_001140_160 Hb_001140_160 Hb_000707_080--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_000707_080--Hb_001631_070 Hb_000957_040 Hb_000957_040 Hb_000707_080--Hb_000957_040 Hb_012347_010 Hb_012347_010 Hb_000707_080--Hb_012347_010 Hb_000762_020--Hb_000957_040 Hb_000762_020--Hb_001140_160 Hb_000184_040 Hb_000184_040 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_023988_020 Hb_023988_020 Hb_000920_140--Hb_023988_020 Hb_000376_110 Hb_000376_110 Hb_000920_140--Hb_000376_110 Hb_004032_440 Hb_004032_440 Hb_000920_140--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000920_140--Hb_001696_030 Hb_000920_140--Hb_000762_020 Hb_019516_040 Hb_019516_040 Hb_000920_140--Hb_019516_040 Hb_001140_160--Hb_000957_040 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_010872_060 Hb_010872_060 Hb_001631_070--Hb_010872_060 Hb_001631_070--Hb_000957_040 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_124315_040 Hb_124315_040 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_010872_060 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_000130_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.1899 4.07331 0.242352 4.83602 17.8206 28.5899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8154 6.1632 28.6728 0.675184 0.542886

CAGE analysis