Hb_000708_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig708: 2304-5600
Sequence    

Annotation

kegg
ID mdm:103428131
description disease resistance protein RGA2-like
nr
ID XP_012074608.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A061FEU3
description Nbs-lrr resistance protein, putative OS=Theobroma cacao GN=TCM_034588 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000708_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_005843_010 0.0774253636 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
3 Hb_005678_020 0.0816217213 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005914_160 0.0817454521 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
5 Hb_000389_170 0.0927481125 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_001699_110 0.0937318785 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
7 Hb_000462_010 0.0989125098 - - hypothetical protein VITISV_041696 [Vitis vinifera]
8 Hb_009315_010 0.0996393964 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
9 Hb_002421_150 0.1007548745 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
10 Hb_005010_030 0.1008389919 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
11 Hb_002842_010 0.1009654903 - - sulfate transporter, putative [Ricinus communis]
12 Hb_000958_090 0.1021537137 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
13 Hb_005288_100 0.1047352764 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
14 Hb_000661_270 0.1060036289 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
15 Hb_036790_110 0.1078843881 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
16 Hb_003925_120 0.1080297708 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_008727_060 0.1123317889 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_001711_140 0.1128185309 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
19 Hb_001047_210 0.114531962 - - PSI reaction center subunit II [Citrus sinensis]
20 Hb_002400_260 0.1151231298 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000708_020 Hb_000708_020 Hb_005843_010 Hb_005843_010 Hb_000708_020--Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_000708_020--Hb_005678_020 Hb_005914_160 Hb_005914_160 Hb_000708_020--Hb_005914_160 Hb_000389_170 Hb_000389_170 Hb_000708_020--Hb_000389_170 Hb_001699_110 Hb_001699_110 Hb_000708_020--Hb_001699_110 Hb_000462_010 Hb_000462_010 Hb_000708_020--Hb_000462_010 Hb_005843_010--Hb_005678_020 Hb_005843_010--Hb_000462_010 Hb_009315_010 Hb_009315_010 Hb_005843_010--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005843_010--Hb_005010_030 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_005678_020--Hb_000462_010 Hb_005678_020--Hb_009315_010 Hb_005678_020--Hb_005010_030 Hb_036790_110 Hb_036790_110 Hb_005678_020--Hb_036790_110 Hb_003018_150 Hb_003018_150 Hb_005914_160--Hb_003018_150 Hb_005694_120 Hb_005694_120 Hb_005914_160--Hb_005694_120 Hb_000847_030 Hb_000847_030 Hb_005914_160--Hb_000847_030 Hb_001210_060 Hb_001210_060 Hb_005914_160--Hb_001210_060 Hb_001047_210 Hb_001047_210 Hb_005914_160--Hb_001047_210 Hb_008727_060 Hb_008727_060 Hb_000389_170--Hb_008727_060 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_005288_100 Hb_005288_100 Hb_000389_170--Hb_005288_100 Hb_001488_160 Hb_001488_160 Hb_001699_110--Hb_001488_160 Hb_005675_030 Hb_005675_030 Hb_001699_110--Hb_005675_030 Hb_000958_090 Hb_000958_090 Hb_001699_110--Hb_000958_090 Hb_006291_050 Hb_006291_050 Hb_001699_110--Hb_006291_050 Hb_001699_110--Hb_005843_010 Hb_000462_010--Hb_005010_030 Hb_000462_010--Hb_009315_010 Hb_001711_140 Hb_001711_140 Hb_000462_010--Hb_001711_140 Hb_000462_010--Hb_036790_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.248816 0.508657 0.789962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0131258 0.0103292 0 0.0040947 1.69975

CAGE analysis