Hb_000708_030

Information

Type -
Description -
Location Contig708: 7069-22906
Sequence    

Annotation

kegg
ID rcu:RCOM_0810470
description nucleotide binding protein, putative
nr
ID XP_012093077.1
description PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
swissprot
ID Q92466
description DNA damage-binding protein 2 OS=Homo sapiens GN=DDB2 PE=1 SV=1
trembl
ID A0A067L7L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16289 PE=4 SV=1
Gene Ontology
ID GO:0019013
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55165: 7719-11500 , PASA_asmbl_55166: 10303-10771 , PASA_asmbl_55170: 21069-22787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000708_030 0.0 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
2 Hb_006831_140 0.0453539126 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_003680_120 0.0539745116 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
4 Hb_000699_030 0.0554491762 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
5 Hb_000327_270 0.0555125159 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
6 Hb_005730_040 0.0559825597 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
7 Hb_093458_040 0.0625769798 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_000521_250 0.0632541616 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
9 Hb_000138_100 0.0644660338 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
10 Hb_006059_040 0.0647732546 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
11 Hb_002110_190 0.0648303795 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
12 Hb_000976_140 0.0659957891 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
13 Hb_000078_120 0.0660311303 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_000069_380 0.0666834254 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
15 Hb_000732_010 0.0668307548 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_002592_060 0.067371229 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001946_400 0.0682626934 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
18 Hb_001021_150 0.0695534671 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
19 Hb_002263_020 0.0700891639 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_004254_090 0.0710215787 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]

Gene co-expression network

sample Hb_000708_030 Hb_000708_030 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_003680_120--Hb_000327_270 Hb_000665_100 Hb_000665_100 Hb_003680_120--Hb_000665_100 Hb_002110_190 Hb_002110_190 Hb_003680_120--Hb_002110_190 Hb_011037_030 Hb_011037_030 Hb_003680_120--Hb_011037_030 Hb_003680_120--Hb_005730_040 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_000699_030--Hb_003680_120 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_001225_040 Hb_001225_040 Hb_005730_040--Hb_001225_040 Hb_093458_040--Hb_002849_130 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5676 4.91611 4.92523 5.3652 4.30794 5.14227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69566 5.33044 4.58639 5.39768 5.90179

CAGE analysis