Hb_000710_010

Information

Type -
Description -
Location Contig710: 7148-9784
Sequence    

Annotation

kegg
ID cit:102610398
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012067552.1
description PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
swissprot
ID P93295
description Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1
trembl
ID F4NCJ4
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55205: 4984-7547 , PASA_asmbl_55206: 3925-7547 , PASA_asmbl_55207: 7628-8010 , PASA_asmbl_55208: 8202-8380 , PASA_asmbl_55209: 8419-8735 , PASA_asmbl_55210: 9014-9234
cDNA
(Sanger)
(ID:Location)		 039_O01r.ab1: 9480-9823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_010 0.0 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
2 Hb_021576_040 0.0902232113 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002234_140 0.1095998983 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
4 Hb_001427_050 0.110878979 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
5 Hb_008112_040 0.1133899142 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
6 Hb_003687_230 0.1186295517 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
7 Hb_000438_170 0.1199178852 - - -
8 Hb_000009_530 0.121457743 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
9 Hb_001195_570 0.1258461555 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
10 Hb_000144_100 0.1276744157 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_000771_080 0.1283245498 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
12 Hb_001348_070 0.1293241485 - - Uncharacterized protein isoform 1 [Theobroma cacao]
13 Hb_000286_070 0.129365528 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_017002_020 0.1310551728 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
15 Hb_002687_140 0.1311356575 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
16 Hb_000395_290 0.1317033667 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
17 Hb_013405_060 0.1333343518 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
18 Hb_000444_080 0.1353748568 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
19 Hb_007007_050 0.1364594574 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
20 Hb_002292_010 0.1366371888 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]

Gene co-expression network

sample Hb_000710_010 Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_000710_010--Hb_021576_040 Hb_002234_140 Hb_002234_140 Hb_000710_010--Hb_002234_140 Hb_001427_050 Hb_001427_050 Hb_000710_010--Hb_001427_050 Hb_008112_040 Hb_008112_040 Hb_000710_010--Hb_008112_040 Hb_003687_230 Hb_003687_230 Hb_000710_010--Hb_003687_230 Hb_000438_170 Hb_000438_170 Hb_000710_010--Hb_000438_170 Hb_021576_040--Hb_002234_140 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_000009_530 Hb_000009_530 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_002234_140--Hb_000009_530 Hb_002292_010 Hb_002292_010 Hb_001427_050--Hb_002292_010 Hb_001427_050--Hb_003687_230 Hb_007007_050 Hb_007007_050 Hb_001427_050--Hb_007007_050 Hb_002639_150 Hb_002639_150 Hb_001427_050--Hb_002639_150 Hb_003467_010 Hb_003467_010 Hb_001427_050--Hb_003467_010 Hb_000926_180 Hb_000926_180 Hb_001427_050--Hb_000926_180 Hb_007154_020 Hb_007154_020 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_004363_010 Hb_004363_010 Hb_008112_040--Hb_004363_010 Hb_000025_230 Hb_000025_230 Hb_008112_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_008112_040--Hb_028841_030 Hb_008112_040--Hb_003687_230 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000462_140 Hb_000462_140 Hb_000438_170--Hb_000462_140 Hb_000789_090 Hb_000789_090 Hb_000438_170--Hb_000789_090 Hb_000109_090 Hb_000109_090 Hb_000438_170--Hb_000109_090 Hb_002284_090 Hb_002284_090 Hb_000438_170--Hb_002284_090 Hb_028347_010 Hb_028347_010 Hb_000438_170--Hb_028347_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3835 1.64788 1.68809 0.434094 1.95659 1.15316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01302 2.96922 0.422906 0.633245 0.588366

CAGE analysis