Hb_000710_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig710: 83426-92494
Sequence    

Annotation

kegg
ID rcu:RCOM_1314760
description transcription factor, putative
nr
ID XP_012086563.1
description PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID R4NEW2
description NAC transcription factor 055 OS=Jatropha curcas GN=JCGZ_20334 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55223: 83460-92440 , PASA_asmbl_55225: 86411-86831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_060 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
2 Hb_000185_030 0.0523136154 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
3 Hb_000049_210 0.0544815421 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
4 Hb_008770_030 0.0589605209 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
5 Hb_001633_210 0.0634270414 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
6 Hb_000297_010 0.0634444722 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
7 Hb_001205_240 0.0670133667 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
8 Hb_003371_090 0.0694486836 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
9 Hb_019863_070 0.0702316523 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_002450_020 0.0704457037 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_007508_090 0.0705256031 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_000614_250 0.0709776288 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
13 Hb_000189_560 0.0733840811 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
14 Hb_000840_250 0.0742676326 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_002391_310 0.0747200999 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
16 Hb_003761_010 0.0749525697 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000868_090 0.0753830964 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_000041_100 0.0757627634 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
19 Hb_008725_230 0.0761185296 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_015807_150 0.0785679207 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000710_060 Hb_000710_060 Hb_000185_030 Hb_000185_030 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_000185_030--Hb_000297_010 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_000185_030--Hb_001633_210 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_000840_250 Hb_000840_250 Hb_000185_030--Hb_000840_250 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_149985_010 Hb_149985_010 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_015807_150 Hb_015807_150 Hb_008770_030--Hb_015807_150 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_008770_030--Hb_000185_030 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_001633_210--Hb_000297_010 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000297_010--Hb_000840_250 Hb_000028_370 Hb_000028_370 Hb_001205_240--Hb_000028_370 Hb_001205_240--Hb_003761_010 Hb_001205_240--Hb_008725_230 Hb_002205_110 Hb_002205_110 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9168 24.04 9.84568 18.0728 12.2113 15.0192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1978 25.2816 24.8982 20.2436 15.1259

CAGE analysis