Hb_000710_160

Information

Type -
Description -
Location Contig710: 206881-214127
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description endochitinase a-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_160 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_003746_020 0.1508635048 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
3 Hb_062192_060 0.1860739796 - - maturase (mitochondrion) [Hevea brasiliensis]
4 Hb_088080_030 0.1866153685 - - ribosomal protein S4 [Hevea brasiliensis]
5 Hb_002686_060 0.1877075747 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000699_080 0.1934156512 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
7 Hb_000920_020 0.2026742723 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
8 Hb_000172_620 0.2036647621 - - hypothetical protein VITISV_033646 [Vitis vinifera]
9 Hb_079526_010 0.2050796515 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
10 Hb_003362_020 0.2105575881 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
11 Hb_168031_020 0.2133793699 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
12 Hb_062192_030 0.2136311927 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
13 Hb_154430_010 0.215412981 - - PREDICTED: uncharacterized protein LOC105637632 isoform X2 [Jatropha curcas]
14 Hb_005154_090 0.2164680529 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_004987_030 0.2184644218 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
16 Hb_189099_020 0.2187107488 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
17 Hb_000029_380 0.2200334588 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003336_020 0.2226873359 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
19 Hb_102602_010 0.223815864 - - orf175 (mitochondrion) [Panax ginseng]
20 Hb_034455_010 0.2248978315 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000710_160 Hb_000710_160 Hb_003746_020 Hb_003746_020 Hb_000710_160--Hb_003746_020 Hb_062192_060 Hb_062192_060 Hb_000710_160--Hb_062192_060 Hb_088080_030 Hb_088080_030 Hb_000710_160--Hb_088080_030 Hb_002686_060 Hb_002686_060 Hb_000710_160--Hb_002686_060 Hb_000699_080 Hb_000699_080 Hb_000710_160--Hb_000699_080 Hb_000920_020 Hb_000920_020 Hb_000710_160--Hb_000920_020 Hb_003746_020--Hb_088080_030 Hb_003746_020--Hb_000920_020 Hb_189099_020 Hb_189099_020 Hb_003746_020--Hb_189099_020 Hb_003746_020--Hb_062192_060 Hb_154430_010 Hb_154430_010 Hb_003746_020--Hb_154430_010 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_088080_030--Hb_189099_020 Hb_088080_030--Hb_000920_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_002686_060--Hb_000699_080 Hb_000038_020 Hb_000038_020 Hb_002686_060--Hb_000038_020 Hb_003336_020 Hb_003336_020 Hb_002686_060--Hb_003336_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_000359_070 Hb_000359_070 Hb_002686_060--Hb_000359_070 Hb_168031_020 Hb_168031_020 Hb_002686_060--Hb_168031_020 Hb_006925_030 Hb_006925_030 Hb_000699_080--Hb_006925_030 Hb_000699_080--Hb_003336_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_000699_080--Hb_168031_020 Hb_034168_010 Hb_034168_010 Hb_000920_020--Hb_034168_010 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_000920_020--Hb_189099_020 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133291 0.00548649 0.0301236 0.034859 0 0.023289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0237888 0.0454761 0.0613436 0.557911

CAGE analysis