Hb_000711_010

Information

Type transcription factor
Description TF Family: Tify
Location Contig711: 2540-8697
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04880g
description hypothetical protein
nr
ID XP_012064635.1
description PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
swissprot
ID Q9LVI4
description Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
trembl
ID A0A067LI79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22919 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55285: 2481-6300 , PASA_asmbl_55286: 3731-8928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000711_010 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
2 Hb_002349_030 0.0709874052 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002965_050 0.0721460642 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
4 Hb_002876_210 0.0726284499 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
5 Hb_000012_240 0.0739084357 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
6 Hb_002900_120 0.0836509359 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
7 Hb_060094_010 0.0855656513 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
8 Hb_001729_020 0.08664878 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_002217_090 0.0902954606 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
10 Hb_001956_060 0.0903969883 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
11 Hb_000680_120 0.0915558897 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
12 Hb_000156_090 0.0951343879 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
13 Hb_000015_090 0.0974140541 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
14 Hb_000452_030 0.0979719549 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
15 Hb_000979_140 0.0987390938 - - kinase family protein [Populus trichocarpa]
16 Hb_004128_030 0.1001393089 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
17 Hb_000704_030 0.1006406788 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
18 Hb_002686_150 0.1010915403 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_003428_090 0.101253478 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
20 Hb_002259_170 0.101679647 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000711_010 Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_002965_050 Hb_002965_050 Hb_000711_010--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_000711_010--Hb_002876_210 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_002349_030--Hb_060094_010 Hb_001729_020 Hb_001729_020 Hb_002349_030--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_002349_030--Hb_000197_180 Hb_002349_030--Hb_000012_240 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_002900_120--Hb_000156_090 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55411 8.80317 6.7548 7.3021 1.02196 1.54262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91647 3.05912 2.5052 4.26857 5.63412

CAGE analysis