Hb_000711_030

Information

Type -
Description -
Location Contig711: 12953-39135
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02860g
description hypothetical protein
nr
ID XP_006371039.1
description hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID U5FG41
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02860g PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55287: 23606-24214 , PASA_asmbl_55291: 33555-34310 , PASA_asmbl_55292: 37905-38908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000711_030 0.0 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
2 Hb_004650_050 0.0793713883 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_009838_070 0.0907802497 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
4 Hb_001159_070 0.093767 - - DNA photolyase, putative [Ricinus communis]
5 Hb_000950_020 0.0944055364 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
6 Hb_000327_260 0.0988887705 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005000_110 0.1011157141 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
8 Hb_003680_060 0.101289934 - - hypothetical protein VITISV_022322 [Vitis vinifera]
9 Hb_000392_260 0.1063973506 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
10 Hb_009393_130 0.1090246832 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_000190_230 0.1097673126 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
12 Hb_000116_220 0.1110849545 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000020_090 0.1130910003 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
14 Hb_000352_280 0.1171240352 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
15 Hb_000808_130 0.1179486446 - - 3-5 exonuclease, putative [Ricinus communis]
16 Hb_091433_050 0.1180604219 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
17 Hb_000749_260 0.1185768688 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
18 Hb_023344_090 0.1189200747 - - Photosystem II reaction center W protein, putative [Ricinus communis]
19 Hb_004096_210 0.1192290705 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
20 Hb_003120_020 0.1197639731 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]

Gene co-expression network

sample Hb_000711_030 Hb_000711_030 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_005000_110 Hb_005000_110 Hb_000711_030--Hb_005000_110 Hb_004650_050--Hb_009838_070 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_003680_060 Hb_003680_060 Hb_004650_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_003680_060 Hb_009838_070--Hb_004096_210 Hb_000392_260 Hb_000392_260 Hb_001159_070--Hb_000392_260 Hb_004920_020 Hb_004920_020 Hb_001159_070--Hb_004920_020 Hb_001159_070--Hb_000950_020 Hb_001159_070--Hb_005000_110 Hb_000948_120 Hb_000948_120 Hb_001159_070--Hb_000948_120 Hb_000950_020--Hb_004920_020 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_000544_070 Hb_000544_070 Hb_000950_020--Hb_000544_070 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_001343_030 Hb_001343_030 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.022643 0.104095 1.88211 0.89761 0.0192794 0.0136802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0344149 0.0722218 0.0693058 0.139484 1.97178

CAGE analysis