Hb_000712_060

Information

Type -
Description -
Location Contig712: 101729-109226
Sequence    

Annotation

kegg
ID rcu:RCOM_1487270
description hypothetical protein
nr
ID XP_012069050.1
description PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0T4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24827 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55323: 101737-102294 , PASA_asmbl_55324: 105340-111906 , PASA_asmbl_55325: 108854-109372
cDNA
(Sanger)
(ID:Location)		 016_M18.ab1: 105331-111906 , 025_H13.ab1: 105340-111893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000712_060 0.0 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
2 Hb_000828_020 0.053303128 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_001948_040 0.06578115 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
4 Hb_023732_020 0.071625554 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
5 Hb_009026_040 0.0760284072 - - pathogenesis-related family protein [Populus trichocarpa]
6 Hb_000221_200 0.0765576603 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
7 Hb_003073_020 0.0855474681 - - protein binding protein, putative [Ricinus communis]
8 Hb_002249_180 0.0918636967 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_012707_050 0.0918683762 - - hypothetical protein RCOM_1341590 [Ricinus communis]
10 Hb_000679_070 0.092513909 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
11 Hb_039363_010 0.097468702 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_039562_010 0.0990712518 - - PREDICTED: protein SRG1-like [Jatropha curcas]
13 Hb_002570_020 0.0996163924 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
14 Hb_004097_080 0.1017682035 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
15 Hb_002835_020 0.1023220199 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
16 Hb_058620_010 0.1076818101 - - cytochrome P450, putative [Ricinus communis]
17 Hb_005433_050 0.1092905151 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
18 Hb_000563_060 0.1098550546 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
19 Hb_135392_010 0.1111411361 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_000388_160 0.1115751193 - - xyloglucan endo-1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000712_060 Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_000712_060--Hb_000828_020 Hb_001948_040 Hb_001948_040 Hb_000712_060--Hb_001948_040 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_009026_040 Hb_009026_040 Hb_000712_060--Hb_009026_040 Hb_000221_200 Hb_000221_200 Hb_000712_060--Hb_000221_200 Hb_003073_020 Hb_003073_020 Hb_000712_060--Hb_003073_020 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_001948_040 Hb_000828_020--Hb_009026_040 Hb_000828_020--Hb_003073_020 Hb_002249_180 Hb_002249_180 Hb_000828_020--Hb_002249_180 Hb_001948_040--Hb_009026_040 Hb_001948_040--Hb_000221_200 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_001948_040--Hb_002249_180 Hb_023732_020--Hb_003073_020 Hb_023080_010 Hb_023080_010 Hb_023732_020--Hb_023080_010 Hb_023732_020--Hb_000828_020 Hb_032717_030 Hb_032717_030 Hb_023732_020--Hb_032717_030 Hb_039562_010 Hb_039562_010 Hb_023732_020--Hb_039562_010 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000221_200 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_000699_060 Hb_000699_060 Hb_000221_200--Hb_000699_060 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_003073_020--Hb_032717_030 Hb_003073_020--Hb_039363_010 Hb_002835_020 Hb_002835_020 Hb_003073_020--Hb_002835_020 Hb_005433_050 Hb_005433_050 Hb_003073_020--Hb_005433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.125036 0.0504118 0.132665 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0504249 0 0 17.3825 0.486937

CAGE analysis