Hb_000712_070

Information

Type -
Description -
Location Contig712: 111467-111816
Sequence    

Annotation

kegg
ID rcu:RCOM_1487280
description hypothetical protein
nr
ID XP_002515929.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1487280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55324: 105340-111906 , PASA_asmbl_55326: 111445-111906
cDNA
(Sanger)
(ID:Location)		 016_M18.ab1: 105331-111906 , 025_H13.ab1: 105340-111893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000712_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002805_230 0.0431113643 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
3 Hb_003090_070 0.0457125282 - - PREDICTED: laccase-7 [Jatropha curcas]
4 Hb_000141_070 0.0556679843 - - l-lactate dehydrogenase, putative [Ricinus communis]
5 Hb_003334_080 0.0574077397 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_004693_010 0.0579317882 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
7 Hb_007483_040 0.0583655125 - - PREDICTED: protein SRG1-like [Jatropha curcas]
8 Hb_009568_010 0.0620982481 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
9 Hb_001134_040 0.0628275742 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
10 Hb_058620_010 0.0644542354 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000503_040 0.0706629922 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
12 Hb_000446_100 0.0713350264 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_001930_060 0.0734349944 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_001301_020 0.0738457584 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_058620_050 0.0761255425 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_002553_170 0.0771559057 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
17 Hb_058620_040 0.0783216709 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
18 Hb_000059_100 0.0790299052 - - Basic blue protein, putative [Ricinus communis]
19 Hb_001699_240 0.079377052 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_004097_080 0.0795862843 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000712_070 Hb_000712_070 Hb_002805_230 Hb_002805_230 Hb_000712_070--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000712_070--Hb_003090_070 Hb_000141_070 Hb_000141_070 Hb_000712_070--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_000712_070--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_000712_070--Hb_004693_010 Hb_007483_040 Hb_007483_040 Hb_000712_070--Hb_007483_040 Hb_002805_230--Hb_003090_070 Hb_001134_040 Hb_001134_040 Hb_002805_230--Hb_001134_040 Hb_007532_050 Hb_007532_050 Hb_002805_230--Hb_007532_050 Hb_058620_010 Hb_058620_010 Hb_002805_230--Hb_058620_010 Hb_002805_230--Hb_004693_010 Hb_003090_070--Hb_001134_040 Hb_003090_070--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_003090_070--Hb_000059_100 Hb_003090_070--Hb_007532_050 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_009568_010 Hb_009568_010 Hb_000141_070--Hb_009568_010 Hb_000141_070--Hb_007483_040 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_003334_080--Hb_058620_040 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_003334_080--Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_004693_010--Hb_058620_040 Hb_004693_010--Hb_000141_070 Hb_004693_010--Hb_003334_080 Hb_000318_440 Hb_000318_440 Hb_004693_010--Hb_000318_440 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_020480_050 Hb_020480_050 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_009568_010 Hb_007483_040--Hb_003334_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.62535 2.93027 4.32367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 148.048 0.861083

CAGE analysis