Hb_000713_020

Information

Type -
Description -
Location Contig713: 50187-54110
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000713_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000179_150 0.2230403535 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
3 Hb_000189_360 0.2350344435 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
4 Hb_133311_010 0.2621022297 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
5 Hb_084889_010 0.2671708319 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
6 Hb_011242_030 0.282045937 - - -
7 Hb_114839_010 0.2996282443 - - -
8 Hb_009139_010 0.3041793001 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
9 Hb_011457_020 0.3059771153 - - PREDICTED: uncharacterized protein LOC105649960 [Jatropha curcas]
10 Hb_078604_010 0.3091270493 - - -
11 Hb_001495_060 0.312747093 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
12 Hb_004204_090 0.3159214722 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
13 Hb_012135_010 0.3189315444 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_003992_110 0.319592304 - - hypothetical protein VITISV_016971 [Vitis vinifera]
15 Hb_002272_190 0.3223207727 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_002175_040 0.3261727902 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_092449_010 0.3293101733 - - -
18 Hb_019033_010 0.3319749419 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
19 Hb_001277_210 0.3341867459 - - -
20 Hb_047287_040 0.3346105056 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_000713_020 Hb_000713_020 Hb_000179_150 Hb_000179_150 Hb_000713_020--Hb_000179_150 Hb_000189_360 Hb_000189_360 Hb_000713_020--Hb_000189_360 Hb_133311_010 Hb_133311_010 Hb_000713_020--Hb_133311_010 Hb_084889_010 Hb_084889_010 Hb_000713_020--Hb_084889_010 Hb_011242_030 Hb_011242_030 Hb_000713_020--Hb_011242_030 Hb_114839_010 Hb_114839_010 Hb_000713_020--Hb_114839_010 Hb_000179_150--Hb_084889_010 Hb_000179_150--Hb_133311_010 Hb_109578_010 Hb_109578_010 Hb_000179_150--Hb_109578_010 Hb_009139_010 Hb_009139_010 Hb_000179_150--Hb_009139_010 Hb_001495_060 Hb_001495_060 Hb_000179_150--Hb_001495_060 Hb_000189_360--Hb_114839_010 Hb_007451_060 Hb_007451_060 Hb_000189_360--Hb_007451_060 Hb_003992_110 Hb_003992_110 Hb_000189_360--Hb_003992_110 Hb_000189_360--Hb_009139_010 Hb_000189_360--Hb_000179_150 Hb_012135_010 Hb_012135_010 Hb_133311_010--Hb_012135_010 Hb_008667_040 Hb_008667_040 Hb_133311_010--Hb_008667_040 Hb_007333_010 Hb_007333_010 Hb_133311_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_133311_010--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_133311_010--Hb_000264_290 Hb_084889_010--Hb_109578_010 Hb_032974_010 Hb_032974_010 Hb_084889_010--Hb_032974_010 Hb_004102_030 Hb_004102_030 Hb_084889_010--Hb_004102_030 Hb_000975_270 Hb_000975_270 Hb_084889_010--Hb_000975_270 Hb_001017_080 Hb_001017_080 Hb_084889_010--Hb_001017_080 Hb_002685_180 Hb_002685_180 Hb_011242_030--Hb_002685_180 Hb_019033_010 Hb_019033_010 Hb_011242_030--Hb_019033_010 Hb_000453_210 Hb_000453_210 Hb_011242_030--Hb_000453_210 Hb_001437_050 Hb_001437_050 Hb_011242_030--Hb_001437_050 Hb_000275_130 Hb_000275_130 Hb_011242_030--Hb_000275_130 Hb_011242_030--Hb_001495_060 Hb_000086_330 Hb_000086_330 Hb_114839_010--Hb_000086_330 Hb_000931_030 Hb_000931_030 Hb_114839_010--Hb_000931_030 Hb_042404_010 Hb_042404_010 Hb_114839_010--Hb_042404_010 Hb_004098_030 Hb_004098_030 Hb_114839_010--Hb_004098_030 Hb_070820_010 Hb_070820_010 Hb_114839_010--Hb_070820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00643598 0.0105947 0.00476344 0 0 0.0056219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291895 0.0114849 0 0 0

CAGE analysis