Hb_000714_010

Information

Type -
Description -
Location Contig714: 2460-3038
Sequence    

Annotation

kegg
ID vvi:100247965
description salt stress-induced hydrophobic peptide ESI3
nr
ID XP_002278351.2
description PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
swissprot
ID P68179
description Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1
trembl
ID F6HNK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03650 PE=4 SV=1
Gene Ontology
ID GO:0016021
description low temperature-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55403: 2462-2969
cDNA
(Sanger)
(ID:Location)		 003_F06.ab1: 2484-2964 , 004_C08.ab1: 2485-2966 , 006_F19.ab1: 2486-2961 , 006_J24.ab1: 2485-2966 , 007_A21.ab1: 2484-2963 , 007_F23.ab1: 2484-2963 , 009_E02.ab1: 2486-2966 , 013_E09.ab1: 2485-2967 , 016_B08.ab1: 2484-2963 , 020_D01.ab1: 2533-2966 , 021_H09.ab1: 2484-2953 , 025_I09.ab1: 2484-2963 , 027_E11.ab1: 2486-2966 , 029_L15.ab1: 2486-2963 , 033_K04.ab1: 2484-2971 , 039_O24.ab1: 2484-2964 , 040_B11.ab1: 2484-2966 , 040_P15.ab1: 2485-2963 , 041_N10.ab1: 2484-2966 , 044_I21.ab1: 2486-2961 , 046_L10.ab1: 2484-2966 , 050_M15.ab1: 2484-2966 , 051_B02.ab1: 2533-2716

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_010 0.0 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
2 Hb_003050_070 0.1105692609 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000250_010 0.1250982924 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_003211_050 0.1291434957 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_010166_020 0.1454019377 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
6 Hb_003777_230 0.1465089175 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
7 Hb_149683_010 0.1472890848 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
8 Hb_000861_050 0.1527642447 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
9 Hb_011671_400 0.1543921559 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
10 Hb_010172_100 0.1548050792 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
11 Hb_000387_060 0.1562132376 - - -
12 Hb_000052_010 0.1569757765 - - hypothetical protein M569_08416, partial [Genlisea aurea]
13 Hb_001671_060 0.1601856652 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
14 Hb_032660_020 0.1606394896 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
15 Hb_005908_040 0.1613426715 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
16 Hb_000544_110 0.1627740319 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_008864_060 0.1652290097 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
18 Hb_005137_020 0.1675933126 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
19 Hb_002918_300 0.1681124659 - - -
20 Hb_006816_440 0.1728379972 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000714_010 Hb_000714_010 Hb_003050_070 Hb_003050_070 Hb_000714_010--Hb_003050_070 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_003211_050 Hb_003211_050 Hb_000714_010--Hb_003211_050 Hb_010166_020 Hb_010166_020 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_149683_010 Hb_149683_010 Hb_000714_010--Hb_149683_010 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_003050_070--Hb_010166_020 Hb_003050_070--Hb_149683_010 Hb_008864_060 Hb_008864_060 Hb_000250_010--Hb_008864_060 Hb_001671_060 Hb_001671_060 Hb_000250_010--Hb_001671_060 Hb_011671_400 Hb_011671_400 Hb_000250_010--Hb_011671_400 Hb_001959_260 Hb_001959_260 Hb_000250_010--Hb_001959_260 Hb_000250_010--Hb_003050_070 Hb_001276_060 Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_007741_040 Hb_007741_040 Hb_010166_020--Hb_007741_040 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_003777_230--Hb_010166_020 Hb_003777_230--Hb_007741_040 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_004055_060 Hb_004055_060 Hb_003777_230--Hb_004055_060 Hb_006816_440 Hb_006816_440 Hb_149683_010--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_149683_010--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1307.34 8.15612 16.0609 40.6299 334.242 310.189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4050.85 3861.8 1414.85 73.8579 8.83659

CAGE analysis