Hb_000714_020

Information

Type -
Description -
Location Contig714: 8008-11878
Sequence    

Annotation

kegg
ID rcu:RCOM_1068300
description hypothetical protein
nr
ID XP_012073793.1
description PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55405: 8010-11740 , PASA_asmbl_55406: 8020-11810
cDNA
(Sanger)
(ID:Location)		 035_G24.ab1: 8022-11810

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_020 0.0 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
2 Hb_011609_030 0.0502691776 - - conserved hypothetical protein 13 [Hevea brasiliensis]
3 Hb_001623_370 0.0649197006 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001493_100 0.0774226951 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
5 Hb_001514_020 0.0857867455 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
6 Hb_002619_010 0.0894672618 - - -
7 Hb_004374_010 0.0918179138 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
8 Hb_000062_230 0.0921928629 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
9 Hb_005754_020 0.0923022851 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
10 Hb_005741_020 0.0927042659 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
11 Hb_001956_120 0.093307765 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002044_090 0.0964925259 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
13 Hb_000590_090 0.0973655038 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_004232_010 0.0975501683 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
15 Hb_011930_010 0.0978195249 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
16 Hb_000028_470 0.0987722243 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
17 Hb_002078_430 0.0996354143 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_178968_150 0.0998340661 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001956_050 0.101363222 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
20 Hb_000038_130 0.103760961 - - -

Gene co-expression network

sample Hb_000714_020 Hb_000714_020 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_004232_010 Hb_004232_010 Hb_011609_030--Hb_004232_010 Hb_011609_030--Hb_001623_370 Hb_005741_020 Hb_005741_020 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110 Hb_004813_010 Hb_004813_010 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001514_020--Hb_004502_030 Hb_001514_020--Hb_007992_030 Hb_004137_030 Hb_004137_030 Hb_002619_010--Hb_004137_030 Hb_073973_170 Hb_073973_170 Hb_002619_010--Hb_073973_170 Hb_002619_010--Hb_004374_010 Hb_002619_010--Hb_005741_020 Hb_000590_090 Hb_000590_090 Hb_002619_010--Hb_000590_090 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
226.663 37.2483 22.7674 16.7607 120.053 144.193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.356 86.7597 52.6618 19.3473 7.3353

CAGE analysis