Hb_000714_040

Information

Type -
Description -
Location Contig714: 36886-47730
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22390g
description POPTRDRAFT_770481; dentin sialophosphoprotein
nr
ID XP_012072941.1
description PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID A0A067KMD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55409: 36965-40941 , PASA_asmbl_55410: 36965-41098 , PASA_asmbl_55412: 41580-42302 , PASA_asmbl_55413: 44152-44847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_040 0.0 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
2 Hb_005488_170 0.0767069056 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
3 Hb_000815_170 0.0813221195 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
4 Hb_013459_010 0.082930787 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
5 Hb_003119_080 0.0843828982 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_099270_030 0.0880456957 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
7 Hb_005348_010 0.0913958431 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006618_050 0.0916842569 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
9 Hb_002636_110 0.0938443034 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
10 Hb_006295_020 0.094791708 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
11 Hb_011609_150 0.0948818387 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
12 Hb_002909_120 0.0958854751 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
13 Hb_003506_050 0.0969965651 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_007545_130 0.0973645939 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_002600_060 0.0982133925 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
16 Hb_000046_190 0.1006169704 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
17 Hb_005801_020 0.1024458807 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
18 Hb_001133_030 0.102767187 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
19 Hb_000925_090 0.103046251 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
20 Hb_010998_020 0.1043505148 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_000714_040 Hb_000714_040 Hb_005488_170 Hb_005488_170 Hb_000714_040--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_000714_040--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_000714_040--Hb_013459_010 Hb_003119_080 Hb_003119_080 Hb_000714_040--Hb_003119_080 Hb_099270_030 Hb_099270_030 Hb_000714_040--Hb_099270_030 Hb_005348_010 Hb_005348_010 Hb_000714_040--Hb_005348_010 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005488_170--Hb_005348_010 Hb_156279_010 Hb_156279_010 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_005250_030 Hb_005250_030 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_007545_130 Hb_007545_130 Hb_013459_010--Hb_007545_130 Hb_013459_010--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_013459_010--Hb_000925_090 Hb_013459_010--Hb_135572_010 Hb_013459_010--Hb_000815_170 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_001726_050 Hb_001726_050 Hb_099270_030--Hb_001726_050 Hb_099270_030--Hb_005348_010 Hb_012098_070 Hb_012098_070 Hb_099270_030--Hb_012098_070 Hb_099270_030--Hb_156279_010 Hb_099270_030--Hb_005488_170 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005348_010--Hb_002909_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.14368 6.75784 3.82947 3.34211 7.36828 5.98029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83045 1.70488 5.42092 6.76465 12.0007

CAGE analysis