Hb_000714_060

Information

Type transcription factor
Description TF Family: LOB
Location Contig714: 86990-88323
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04350g
description POPTRDRAFT_419520; hypothetical protein
nr
ID XP_011027000.1
description PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
swissprot
ID Q9LQR0
description LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1
trembl
ID B9HLY2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04350g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55424: 87251-88333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_060 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
2 Hb_093218_010 0.037526226 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
3 Hb_032260_060 0.078184179 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
4 Hb_000951_090 0.0940130134 - - Oligopeptide transporter, putative [Ricinus communis]
5 Hb_005731_070 0.0950275044 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001473_060 0.0950672275 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
7 Hb_001104_020 0.0975552916 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000011_370 0.1050268462 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
9 Hb_015001_030 0.1072802147 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
10 Hb_033772_060 0.1131780206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004330_040 0.1143260407 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007017_100 0.1144590122 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
13 Hb_008175_050 0.1191077477 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
14 Hb_000152_120 0.1237982805 - - alpha-l-fucosidase, putative [Ricinus communis]
15 Hb_000668_050 0.1247107808 - - phosphoglycerate mutase, putative [Ricinus communis]
16 Hb_000732_220 0.1253378017 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
17 Hb_003754_020 0.1258535285 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_003189_010 0.1272091709 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
19 Hb_001138_070 0.1320042402 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_002805_180 0.1321238214 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000714_060 Hb_000714_060 Hb_093218_010 Hb_093218_010 Hb_000714_060--Hb_093218_010 Hb_032260_060 Hb_032260_060 Hb_000714_060--Hb_032260_060 Hb_000951_090 Hb_000951_090 Hb_000714_060--Hb_000951_090 Hb_005731_070 Hb_005731_070 Hb_000714_060--Hb_005731_070 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_001104_020 Hb_001104_020 Hb_000714_060--Hb_001104_020 Hb_093218_010--Hb_032260_060 Hb_093218_010--Hb_001104_020 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040 Hb_004330_040 Hb_004330_040 Hb_032260_060--Hb_004330_040 Hb_032260_060--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_032260_060--Hb_003754_020 Hb_000310_110 Hb_000310_110 Hb_032260_060--Hb_000310_110 Hb_000951_090--Hb_001104_020 Hb_000152_120 Hb_000152_120 Hb_000951_090--Hb_000152_120 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_002805_180 Hb_002805_180 Hb_000951_090--Hb_002805_180 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_001473_060--Hb_004330_040 Hb_001473_060--Hb_003754_020 Hb_000668_050 Hb_000668_050 Hb_001473_060--Hb_000668_050 Hb_001473_060--Hb_093218_010 Hb_000732_220 Hb_000732_220 Hb_001104_020--Hb_000732_220 Hb_001104_020--Hb_000152_120 Hb_001104_020--Hb_005892_040 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.420694 2.73551 3.48909 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.14908 1.53791

CAGE analysis