Hb_000714_070

Information

Type transcription factor
Description TF Family: LOB
Location Contig714: 124546-125198
Sequence    

Annotation

kegg
ID rcu:RCOM_0713200
description hypothetical protein
nr
ID KDP32542.1
description hypothetical protein JCGZ_14754 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14754 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55426: 124885-128955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_070 0.0 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
2 Hb_015884_010 0.1054711045 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
3 Hb_010642_010 0.1070595522 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
4 Hb_030827_080 0.110704764 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
5 Hb_153180_010 0.1139011784 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
6 Hb_001856_130 0.1141224201 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
7 Hb_000120_600 0.1166432063 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
8 Hb_000468_050 0.1168292117 - - -
9 Hb_009225_070 0.11772172 - - tonoplast intrinsic protein, putative [Ricinus communis]
10 Hb_012553_030 0.1178292479 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_008352_020 0.119002257 - - hypothetical protein [Cecembia lonarensis]
12 Hb_002739_160 0.1216166455 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_003939_090 0.1283748867 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_000816_150 0.1291142179 - - oligopeptide transporter, putative [Ricinus communis]
15 Hb_120040_010 0.1313784147 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_011355_020 0.131653951 - - extensin, proline-rich protein, putative [Ricinus communis]
17 Hb_000991_080 0.131943955 - - kinase, putative [Ricinus communis]
18 Hb_000983_110 0.1330149509 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
19 Hb_006026_020 0.1342285206 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
20 Hb_008725_020 0.1356128907 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000714_070 Hb_000714_070 Hb_015884_010 Hb_015884_010 Hb_000714_070--Hb_015884_010 Hb_010642_010 Hb_010642_010 Hb_000714_070--Hb_010642_010 Hb_030827_080 Hb_030827_080 Hb_000714_070--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_000714_070--Hb_153180_010 Hb_001856_130 Hb_001856_130 Hb_000714_070--Hb_001856_130 Hb_000120_600 Hb_000120_600 Hb_000714_070--Hb_000120_600 Hb_012553_030 Hb_012553_030 Hb_015884_010--Hb_012553_030 Hb_003939_090 Hb_003939_090 Hb_015884_010--Hb_003939_090 Hb_015884_010--Hb_010642_010 Hb_103541_010 Hb_103541_010 Hb_015884_010--Hb_103541_010 Hb_000468_050 Hb_000468_050 Hb_015884_010--Hb_000468_050 Hb_010642_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_010642_010--Hb_002739_160 Hb_008352_020 Hb_008352_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_010642_010--Hb_003939_090 Hb_001198_180 Hb_001198_180 Hb_010642_010--Hb_001198_180 Hb_030827_080--Hb_002739_160 Hb_030827_080--Hb_008352_020 Hb_030827_080--Hb_153180_010 Hb_030827_080--Hb_001198_180 Hb_001663_090 Hb_001663_090 Hb_030827_080--Hb_001663_090 Hb_153180_010--Hb_002739_160 Hb_153180_010--Hb_001856_130 Hb_153180_010--Hb_001198_180 Hb_002522_040 Hb_002522_040 Hb_153180_010--Hb_002522_040 Hb_008725_020 Hb_008725_020 Hb_153180_010--Hb_008725_020 Hb_001856_130--Hb_000120_600 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001953_010 Hb_001953_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_000120_600--Hb_001953_010 Hb_017549_010 Hb_017549_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.0498 4.73242 22.1074 0 0.0679622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104072 0.0817881 0.142611 2.21644 2.52413

CAGE analysis