Hb_000714_080

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig714: 127581-129295
Sequence    

Annotation

kegg
ID gmx:100804788
description trihelix transcription factor GT-2-like
nr
ID AAL65125.1
description GT-2 factor [Glycine max]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID Q8W239
description GT-2 factor (Fragment) OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55426: 124885-128955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_080 0.0 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
2 Hb_002066_050 0.0847792218 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_000665_090 0.0888498259 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000925_110 0.0895935857 - - Spotted leaf protein, putative [Ricinus communis]
5 Hb_004724_310 0.102864211 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
6 Hb_008963_010 0.1061854789 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
7 Hb_000904_110 0.1070265197 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
8 Hb_001511_200 0.1072693562 - - Embryonic abundant protein, putative [Ricinus communis]
9 Hb_007546_010 0.112614359 - - unnamed protein product [Vitis vinifera]
10 Hb_000668_220 0.117384947 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
11 Hb_004924_020 0.1178684387 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_091826_020 0.1187602856 - - hypothetical protein JCGZ_04975 [Jatropha curcas]
13 Hb_116103_010 0.1215383115 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
14 Hb_128851_020 0.1215582633 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000808_090 0.1253969127 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
16 Hb_001677_140 0.127316693 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
17 Hb_000373_220 0.1283413906 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_001198_170 0.1305055307 - - -
19 Hb_184752_010 0.1332681441 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
20 Hb_010136_020 0.1332856407 - - stress-induced receptor-like kinase [Medicago truncatula]

Gene co-expression network

sample Hb_000714_080 Hb_000714_080 Hb_002066_050 Hb_002066_050 Hb_000714_080--Hb_002066_050 Hb_000665_090 Hb_000665_090 Hb_000714_080--Hb_000665_090 Hb_000925_110 Hb_000925_110 Hb_000714_080--Hb_000925_110 Hb_004724_310 Hb_004724_310 Hb_000714_080--Hb_004724_310 Hb_008963_010 Hb_008963_010 Hb_000714_080--Hb_008963_010 Hb_000904_110 Hb_000904_110 Hb_000714_080--Hb_000904_110 Hb_002066_050--Hb_000665_090 Hb_002066_050--Hb_000925_110 Hb_007546_010 Hb_007546_010 Hb_002066_050--Hb_007546_010 Hb_000627_130 Hb_000627_130 Hb_002066_050--Hb_000627_130 Hb_002066_050--Hb_000904_110 Hb_000808_090 Hb_000808_090 Hb_000665_090--Hb_000808_090 Hb_000665_090--Hb_000925_110 Hb_101058_020 Hb_101058_020 Hb_000665_090--Hb_101058_020 Hb_000665_090--Hb_000904_110 Hb_000656_350 Hb_000656_350 Hb_000925_110--Hb_000656_350 Hb_000925_110--Hb_004724_310 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_006916_220 Hb_006916_220 Hb_004724_310--Hb_006916_220 Hb_000996_100 Hb_000996_100 Hb_004724_310--Hb_000996_100 Hb_004724_310--Hb_008963_010 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_004924_020 Hb_004924_020 Hb_008963_010--Hb_004924_020 Hb_091826_020 Hb_091826_020 Hb_008963_010--Hb_091826_020 Hb_008963_010--Hb_000996_100 Hb_158110_010 Hb_158110_010 Hb_008963_010--Hb_158110_010 Hb_116103_010 Hb_116103_010 Hb_000904_110--Hb_116103_010 Hb_064885_010 Hb_064885_010 Hb_000904_110--Hb_064885_010 Hb_173029_010 Hb_173029_010 Hb_000904_110--Hb_173029_010 Hb_000904_110--Hb_004924_020 Hb_002849_010 Hb_002849_010 Hb_000904_110--Hb_002849_010 Hb_000668_220 Hb_000668_220 Hb_000904_110--Hb_000668_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285723 20.9765 13.1255 12.0999 0.0314685 0.0430283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0247139 0.603832

CAGE analysis