Hb_000714_120

Information

Type -
Description -
Location Contig714: 170561-179351
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15400g
description POPTRDRAFT_830898; vacuolar sorting receptor family protein
nr
ID XP_012065972.1
description PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
swissprot
ID Q9FYH7
description Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3
trembl
ID A0A067L3Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26665 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55429: 170822-179183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_120 0.0 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
2 Hb_004864_020 0.1074692542 - - Polyprotein, putative [Solanum demissum]
3 Hb_000757_020 0.1186460447 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
4 Hb_003177_090 0.1327270006 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
5 Hb_002099_060 0.1337440948 - - Protein AFR, putative [Ricinus communis]
6 Hb_002110_090 0.1415660987 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
7 Hb_000418_150 0.1422731574 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002685_220 0.142287928 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
9 Hb_001737_040 0.1452251424 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
10 Hb_006040_170 0.1493238168 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
11 Hb_000139_510 0.1528674595 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
12 Hb_029748_020 0.153351072 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002671_060 0.1558112648 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
14 Hb_155150_010 0.1568335102 - - kinase, putative [Ricinus communis]
15 Hb_049293_010 0.157339442 - - kinase, putative [Ricinus communis]
16 Hb_005288_210 0.1576195217 - - hypothetical protein VITISV_017217 [Vitis vinifera]
17 Hb_000438_020 0.1578600621 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
18 Hb_002003_040 0.1589289013 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
19 Hb_000107_550 0.1608621463 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
20 Hb_001538_020 0.1624909514 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]

Gene co-expression network

sample Hb_000714_120 Hb_000714_120 Hb_004864_020 Hb_004864_020 Hb_000714_120--Hb_004864_020 Hb_000757_020 Hb_000757_020 Hb_000714_120--Hb_000757_020 Hb_003177_090 Hb_003177_090 Hb_000714_120--Hb_003177_090 Hb_002099_060 Hb_002099_060 Hb_000714_120--Hb_002099_060 Hb_002110_090 Hb_002110_090 Hb_000714_120--Hb_002110_090 Hb_000418_150 Hb_000418_150 Hb_000714_120--Hb_000418_150 Hb_004864_020--Hb_000418_150 Hb_004864_020--Hb_002099_060 Hb_029748_020 Hb_029748_020 Hb_004864_020--Hb_029748_020 Hb_000139_510 Hb_000139_510 Hb_004864_020--Hb_000139_510 Hb_000438_020 Hb_000438_020 Hb_004864_020--Hb_000438_020 Hb_049293_010 Hb_049293_010 Hb_000757_020--Hb_049293_010 Hb_000757_020--Hb_003177_090 Hb_000757_020--Hb_000418_150 Hb_155150_010 Hb_155150_010 Hb_000757_020--Hb_155150_010 Hb_000366_030 Hb_000366_030 Hb_000757_020--Hb_000366_030 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_002099_060--Hb_000438_020 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_002099_060--Hb_000418_150 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_002110_090--Hb_000181_230 Hb_002110_090--Hb_002099_060 Hb_000418_150--Hb_000438_020 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84577 21.1731 12.1498 34.5606 0.915189 5.99213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337164 0.363055 0.159706 27.2268 39.3242

CAGE analysis