Hb_000717_040

Information

Type transcription factor
Description TF Family: B3
Location Contig717: 70654-74729
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03590g
description hypothetical protein
nr
ID XP_006374174.1
description hypothetical protein POPTR_0015s03590g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FPT2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03590g PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription factor val3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000717_040 0.0 transcription factor TF Family: B3 hypothetical protein POPTR_0015s03590g [Populus trichocarpa]
2 Hb_164114_010 0.1909533261 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_089140_110 0.2013464769 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_002325_060 0.2106439678 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
5 Hb_000984_260 0.2115705466 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
6 Hb_001953_140 0.2119762599 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
7 Hb_003633_100 0.216283766 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
8 Hb_062226_150 0.2194708155 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_000077_160 0.2209928245 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
10 Hb_002983_110 0.2230689892 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
11 Hb_005054_020 0.224763556 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
12 Hb_003670_030 0.2297554319 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
13 Hb_001433_160 0.2343251827 - - phosphatase 2C family protein [Populus trichocarpa]
14 Hb_018790_050 0.2344046177 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
15 Hb_101146_010 0.2357160487 - - PREDICTED: peregrin-like [Jatropha curcas]
16 Hb_006018_050 0.2367797831 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
17 Hb_001329_080 0.238730661 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
18 Hb_005245_140 0.2420639342 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
19 Hb_007382_100 0.2423646919 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_000920_220 0.2436927327 - - PREDICTED: uncharacterized protein LOC105631216 [Jatropha curcas]

Gene co-expression network

sample Hb_000717_040 Hb_000717_040 Hb_164114_010 Hb_164114_010 Hb_000717_040--Hb_164114_010 Hb_089140_110 Hb_089140_110 Hb_000717_040--Hb_089140_110 Hb_002325_060 Hb_002325_060 Hb_000717_040--Hb_002325_060 Hb_000984_260 Hb_000984_260 Hb_000717_040--Hb_000984_260 Hb_001953_140 Hb_001953_140 Hb_000717_040--Hb_001953_140 Hb_003633_100 Hb_003633_100 Hb_000717_040--Hb_003633_100 Hb_001722_060 Hb_001722_060 Hb_164114_010--Hb_001722_060 Hb_005054_020 Hb_005054_020 Hb_164114_010--Hb_005054_020 Hb_033642_050 Hb_033642_050 Hb_164114_010--Hb_033642_050 Hb_000077_160 Hb_000077_160 Hb_164114_010--Hb_000077_160 Hb_001493_140 Hb_001493_140 Hb_164114_010--Hb_001493_140 Hb_089140_110--Hb_003633_100 Hb_000072_190 Hb_000072_190 Hb_089140_110--Hb_000072_190 Hb_031822_010 Hb_031822_010 Hb_089140_110--Hb_031822_010 Hb_101146_010 Hb_101146_010 Hb_089140_110--Hb_101146_010 Hb_005701_110 Hb_005701_110 Hb_089140_110--Hb_005701_110 Hb_006018_050 Hb_006018_050 Hb_089140_110--Hb_006018_050 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_002960_090 Hb_002960_090 Hb_000984_260--Hb_002960_090 Hb_000984_260--Hb_005701_110 Hb_000007_430 Hb_000007_430 Hb_000984_260--Hb_000007_430 Hb_006210_020 Hb_006210_020 Hb_000984_260--Hb_006210_020 Hb_019863_030 Hb_019863_030 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_000031_300 Hb_000031_300 Hb_001953_140--Hb_000031_300 Hb_004116_150 Hb_004116_150 Hb_001953_140--Hb_004116_150 Hb_031108_010 Hb_031108_010 Hb_001953_140--Hb_031108_010 Hb_001329_080 Hb_001329_080 Hb_001953_140--Hb_001329_080 Hb_001433_160 Hb_001433_160 Hb_001953_140--Hb_001433_160 Hb_003633_100--Hb_031822_010 Hb_128486_010 Hb_128486_010 Hb_003633_100--Hb_128486_010 Hb_003633_100--Hb_005701_110 Hb_003633_100--Hb_006018_050 Hb_003633_100--Hb_000072_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.414338 0.41663 0.469403 0 0.0394598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0727991 0.228949 0 0.116076 0.11422

CAGE analysis