Hb_000718_080

Information

Type -
Description -
Location Contig718: 153972-169179
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03350g
description POPTRDRAFT_775798; zinc finger family protein
nr
ID XP_007209992.1
description hypothetical protein PRUPE_ppa005259mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WD15
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005259mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55515: 154057-169202 , PASA_asmbl_55516: 154057-169009 , PASA_asmbl_55518: 155181-155365 , PASA_asmbl_55519: 158156-158510
cDNA
(Sanger)
(ID:Location)		 032_C11.ab1: 164302-169202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000718_080 0.0 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
2 Hb_000784_070 0.0810266835 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
3 Hb_032050_040 0.0887646883 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
4 Hb_012322_010 0.0891956768 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_000429_150 0.0895587903 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
6 Hb_000830_030 0.0960366813 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
7 Hb_152202_010 0.0964802449 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
8 Hb_002027_290 0.0975074031 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
9 Hb_000960_040 0.0989467267 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
10 Hb_000062_020 0.0991600367 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_007919_100 0.1001022426 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
12 Hb_007026_040 0.1001363909 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
13 Hb_008484_060 0.1004231918 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
14 Hb_187953_010 0.1012976493 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
15 Hb_002785_050 0.1029140308 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_000127_040 0.1029909093 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
17 Hb_056691_060 0.1042766739 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
18 Hb_000110_190 0.1048330992 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
19 Hb_007638_030 0.1049658026 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
20 Hb_012194_050 0.1072679057 - - Aspartyl aminopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000718_080 Hb_000718_080 Hb_000784_070 Hb_000784_070 Hb_000718_080--Hb_000784_070 Hb_032050_040 Hb_032050_040 Hb_000718_080--Hb_032050_040 Hb_012322_010 Hb_012322_010 Hb_000718_080--Hb_012322_010 Hb_000429_150 Hb_000429_150 Hb_000718_080--Hb_000429_150 Hb_000830_030 Hb_000830_030 Hb_000718_080--Hb_000830_030 Hb_152202_010 Hb_152202_010 Hb_000718_080--Hb_152202_010 Hb_000031_110 Hb_000031_110 Hb_000784_070--Hb_000031_110 Hb_000960_040 Hb_000960_040 Hb_000784_070--Hb_000960_040 Hb_000130_180 Hb_000130_180 Hb_000784_070--Hb_000130_180 Hb_027337_100 Hb_027337_100 Hb_000784_070--Hb_027337_100 Hb_000872_010 Hb_000872_010 Hb_000784_070--Hb_000872_010 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_032050_040--Hb_152202_010 Hb_002273_120 Hb_002273_120 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_000192_080 Hb_000192_080 Hb_012322_010--Hb_000192_080 Hb_187953_010 Hb_187953_010 Hb_012322_010--Hb_187953_010 Hb_007638_030 Hb_007638_030 Hb_012322_010--Hb_007638_030 Hb_000212_380 Hb_000212_380 Hb_012322_010--Hb_000212_380 Hb_012322_010--Hb_000429_150 Hb_000140_280 Hb_000140_280 Hb_012322_010--Hb_000140_280 Hb_000429_150--Hb_007638_030 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_000830_030--Hb_002785_050 Hb_056691_060 Hb_056691_060 Hb_000830_030--Hb_056691_060 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_000362_150 Hb_000362_150 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58426 4.98788 3.06866 9.90938 7.2617 12.332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35982 4.75925 5.47988 6.63955 8.59595

CAGE analysis