Hb_000720_040

Information

Type -
Description -
Location Contig720: 46783-49939
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12340g
description POPTRDRAFT_817339; replication factor C 40 kDa family protein
nr
ID XP_012086977.1
description PREDICTED: replication factor C subunit 2 [Jatropha curcas]
swissprot
ID Q7XRX1
description Replication factor C subunit 4 OS=Oryza sativa subsp. japonica GN=RFC4 PE=2 SV=2
trembl
ID M0ZTP6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003051 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55618: 46865-48647 , PASA_asmbl_55620: 48078-48442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_040 0.0 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
2 Hb_000300_500 0.056952821 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
3 Hb_003994_230 0.0588005715 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
4 Hb_052805_010 0.0614218144 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
5 Hb_002936_010 0.0615955535 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_000948_230 0.0636826093 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000783_010 0.0703267057 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
8 Hb_007878_010 0.0712086086 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
9 Hb_000510_300 0.071568828 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_161574_020 0.0733371864 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
11 Hb_002641_060 0.073661494 - - prefoldin subunit, putative [Ricinus communis]
12 Hb_006588_170 0.0738962655 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
13 Hb_001366_370 0.0742882358 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
14 Hb_000331_090 0.0755179496 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
15 Hb_000207_150 0.075785281 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
16 Hb_013575_010 0.0760164749 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
17 Hb_005271_040 0.0761111483 - - PREDICTED: serine racemase [Jatropha curcas]
18 Hb_011628_060 0.076798711 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
19 Hb_001799_030 0.0773635695 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
20 Hb_000200_020 0.0789041462 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_040 Hb_000720_040 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_006455_120 Hb_006455_120 Hb_000300_500--Hb_006455_120 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000603_150 Hb_000603_150 Hb_000300_500--Hb_000603_150 Hb_003994_230--Hb_000948_230 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_011282_060 Hb_011282_060 Hb_052805_010--Hb_011282_060 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_052805_010--Hb_000783_010 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_013575_010 Hb_013575_010 Hb_000948_230--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_000948_230--Hb_003057_060 Hb_004990_010 Hb_004990_010 Hb_000948_230--Hb_004990_010 Hb_000948_230--Hb_001511_060 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_000783_010--Hb_001366_370 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56689 3.05932 5.96461 6.80231 3.70154 4.75446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57135 5.29323 4.37317 4.7329 2.59332

CAGE analysis