Hb_000720_190

Information

Type -
Description -
Location Contig720: 212395-212700
Sequence    

Annotation

kegg
ID eus:EUTSA_v10029289mg
description hypothetical protein
nr
ID ABK96488.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID -
description -
trembl
ID A9PJD5
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0009816
description osmotin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_190 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_108528_010 0.1385814534 - - unnamed protein product [Coffea canephora]
3 Hb_179520_010 0.1473156978 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
4 Hb_027346_020 0.1564171195 - - -
5 Hb_003052_210 0.1734658414 - - conserved hypothetical protein [Ricinus communis]
6 Hb_159352_010 0.1814527456 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
7 Hb_001959_260 0.1846868659 - - -
8 Hb_000749_240 0.1910334144 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002045_200 0.1952107985 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
10 Hb_003913_140 0.1966577717 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
11 Hb_001902_120 0.196957755 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
12 Hb_002326_170 0.197826318 - - Protein Z, putative [Ricinus communis]
13 Hb_005616_030 0.2065544228 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
14 Hb_017134_010 0.2103534318 - - HEV1.2 [Hevea brasiliensis]
15 Hb_004064_020 0.21091587 - - hypothetical protein M569_06853, partial [Genlisea aurea]
16 Hb_001579_140 0.2134040098 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
17 Hb_008864_060 0.217852105 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
18 Hb_010174_070 0.2243969025 - - -
19 Hb_088538_010 0.2252557595 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
20 Hb_009838_040 0.2295141096 - - hypothetical protein JCGZ_12866 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_190 Hb_000720_190 Hb_108528_010 Hb_108528_010 Hb_000720_190--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_000720_190--Hb_179520_010 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_003052_210 Hb_003052_210 Hb_000720_190--Hb_003052_210 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_004064_020 Hb_004064_020 Hb_108528_010--Hb_004064_020 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_108528_010--Hb_003052_210 Hb_179520_010--Hb_010174_070 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_027346_020--Hb_159352_010 Hb_008864_060 Hb_008864_060 Hb_027346_020--Hb_008864_060 Hb_000450_020 Hb_000450_020 Hb_027346_020--Hb_000450_020 Hb_001276_060 Hb_001276_060 Hb_027346_020--Hb_001276_060 Hb_002326_170 Hb_002326_170 Hb_027346_020--Hb_002326_170 Hb_003052_210--Hb_179520_010 Hb_150818_020 Hb_150818_020 Hb_003052_210--Hb_150818_020 Hb_105602_020 Hb_105602_020 Hb_003052_210--Hb_105602_020 Hb_017134_010 Hb_017134_010 Hb_003052_210--Hb_017134_010 Hb_023051_020 Hb_023051_020 Hb_159352_010--Hb_023051_020 Hb_001373_100 Hb_001373_100 Hb_159352_010--Hb_001373_100 Hb_003226_240 Hb_003226_240 Hb_159352_010--Hb_003226_240 Hb_159352_010--Hb_105602_020 Hb_001959_260--Hb_008864_060 Hb_003211_050 Hb_003211_050 Hb_001959_260--Hb_003211_050 Hb_000250_010 Hb_000250_010 Hb_001959_260--Hb_000250_010 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149698 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1375 1.40247 1.61189 0.51913 0

CAGE analysis