Hb_000721_010

Information

Type -
Description -
Location Contig721: 15-3758
Sequence    

Annotation

kegg
ID rcu:RCOM_0742740
description hypothetical protein
nr
ID XP_002525535.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHR6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0742740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55654: 113-3801 , PASA_asmbl_55655: 2609-3644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000721_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006065_020 0.0837076381 - - -
3 Hb_001847_020 0.0847585735 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
4 Hb_185467_010 0.0912976559 - - -
5 Hb_000046_300 0.0939437624 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_000000_080 0.0949151747 - - lipoate-protein ligase B, putative [Ricinus communis]
7 Hb_000926_020 0.1017253617 - - -
8 Hb_001439_150 0.10464159 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
9 Hb_000890_040 0.1066032627 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
10 Hb_007951_060 0.1075530905 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000028_610 0.1079107202 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
12 Hb_005662_030 0.1086257996 - - protein with unknown function [Ricinus communis]
13 Hb_000359_250 0.1096389325 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
14 Hb_188279_010 0.1101952939 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
15 Hb_168707_030 0.1109386864 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
16 Hb_000392_300 0.1126556694 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
17 Hb_001898_230 0.1131946156 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
18 Hb_024714_020 0.1144234686 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_002024_040 0.1151091507 - - PREDICTED: adenosine kinase [Jatropha curcas]
20 Hb_010139_040 0.1168039952 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000721_010 Hb_000721_010 Hb_006065_020 Hb_006065_020 Hb_000721_010--Hb_006065_020 Hb_001847_020 Hb_001847_020 Hb_000721_010--Hb_001847_020 Hb_185467_010 Hb_185467_010 Hb_000721_010--Hb_185467_010 Hb_000046_300 Hb_000046_300 Hb_000721_010--Hb_000046_300 Hb_000000_080 Hb_000000_080 Hb_000721_010--Hb_000000_080 Hb_000926_020 Hb_000926_020 Hb_000721_010--Hb_000926_020 Hb_000392_300 Hb_000392_300 Hb_006065_020--Hb_000392_300 Hb_006065_020--Hb_000000_080 Hb_005662_030 Hb_005662_030 Hb_006065_020--Hb_005662_030 Hb_000089_220 Hb_000089_220 Hb_006065_020--Hb_000089_220 Hb_006185_050 Hb_006185_050 Hb_006065_020--Hb_006185_050 Hb_001847_020--Hb_000926_020 Hb_188279_010 Hb_188279_010 Hb_001847_020--Hb_188279_010 Hb_011571_010 Hb_011571_010 Hb_001847_020--Hb_011571_010 Hb_001847_020--Hb_000000_080 Hb_003683_160 Hb_003683_160 Hb_001847_020--Hb_003683_160 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000666_110 Hb_000666_110 Hb_000046_300--Hb_000666_110 Hb_002024_040 Hb_002024_040 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_001357_090 Hb_001357_090 Hb_000046_300--Hb_001357_090 Hb_000046_300--Hb_006065_020 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_000008_470 Hb_000008_470 Hb_000926_020--Hb_000008_470 Hb_000123_120 Hb_000123_120 Hb_000926_020--Hb_000123_120 Hb_000926_020--Hb_188279_010 Hb_003862_050 Hb_003862_050 Hb_000926_020--Hb_003862_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.03 25.7651 43.9465 18.5247 52.6892 82.9345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0777 51.7846 65.8299 28.1416 19.8766

CAGE analysis