Hb_000722_030

Information

Type -
Description -
Location Contig722: 151558-153965
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15210g
description POPTRDRAFT_738987; putative plant disease resistance family protein
nr
ID XP_002325632.1
description putative plant disease resistance family protein [Populus trichocarpa]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID B9INK3
description Putative plant disease resistance family protein OS=Populus trichocarpa GN=POPTR_0019s15210g PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55688: 149616-153939 , PASA_asmbl_55690: 150867-151142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000722_030 0.0 - - putative plant disease resistance family protein [Populus trichocarpa]
2 Hb_002518_040 0.0499931015 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_023582_010 0.0563239444 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002066_100 0.0682951632 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
5 Hb_016297_010 0.0699775155 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
6 Hb_019053_040 0.0764936124 - - cytochrome P450, putative [Ricinus communis]
7 Hb_027684_010 0.0779564755 - - hypothetical protein RCOM_0504250 [Ricinus communis]
8 Hb_001258_130 0.0782725309 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
9 Hb_001511_210 0.0852112167 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
10 Hb_003101_020 0.0852585404 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
11 Hb_007545_070 0.0869512913 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
12 Hb_001638_200 0.0888396096 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
13 Hb_001148_110 0.0904496716 - - -
14 Hb_000156_110 0.0919722688 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
15 Hb_002042_180 0.0921872596 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_002835_310 0.0925751584 - - ATP binding protein, putative [Ricinus communis]
17 Hb_174899_010 0.0936242633 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_001439_080 0.0941820962 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_002609_120 0.0964654871 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
20 Hb_023827_030 0.0970270978 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000722_030 Hb_000722_030 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_023582_010 Hb_023582_010 Hb_000722_030--Hb_023582_010 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_027684_010 Hb_027684_010 Hb_000722_030--Hb_027684_010 Hb_003101_020 Hb_003101_020 Hb_002518_040--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_007313_030 Hb_007313_030 Hb_002518_040--Hb_007313_030 Hb_002518_040--Hb_027684_010 Hb_023582_010--Hb_019053_040 Hb_000282_020 Hb_000282_020 Hb_023582_010--Hb_000282_020 Hb_023582_010--Hb_016297_010 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_105148_020 Hb_105148_020 Hb_023582_010--Hb_105148_020 Hb_002066_100--Hb_019053_040 Hb_002066_100--Hb_023582_010 Hb_002066_100--Hb_001258_130 Hb_002066_100--Hb_027684_010 Hb_001511_210 Hb_001511_210 Hb_002066_100--Hb_001511_210 Hb_023827_030 Hb_023827_030 Hb_016297_010--Hb_023827_030 Hb_016297_010--Hb_019053_040 Hb_016297_010--Hb_001258_130 Hb_016297_010--Hb_105148_020 Hb_019053_040--Hb_000282_020 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_019053_040--Hb_105148_020 Hb_019053_040--Hb_023827_030 Hb_001655_080 Hb_001655_080 Hb_027684_010--Hb_001655_080 Hb_021443_060 Hb_021443_060 Hb_027684_010--Hb_021443_060 Hb_000358_160 Hb_000358_160 Hb_027684_010--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.063488 2.09857 34.9538 17.613 0.041618 0.0696946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0156719 0 1.58832 19.4361

CAGE analysis